TissueCFM001667's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to stimulus | 0.007249122 | GO:0050896 |
| protein tyrosine phosphatase activity | 0.019479062 | GO:0004725 |
| electron carrier activity | 0.044083044 | GO:0009055 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004795 | AT1G33680 (2.00E-39) | KH domain-containing protein |
| CRO_T012549 | - | - |
| CRO_T015351 | AT3G63180 (6.00E-12) | ATTKL|TICKLE; TKL|TIC-like |
| CRO_T015859 | AT3G62010 (3.00E-13) | unknown protein |
| CRO_T018542 | AT2G32300 (3.00E-21) | UCC1|uclacyanin 1 |
| CRO_T027811 | AT1G11480 (2.00E-16) | eukaryotic translation initiation factor-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001179 | D-myo-inositol-5-phosphate metabolism mRNA catabolic process rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) peptidyl-tyrosine dephosphorylation Transcription_related, Transcription factor: C3H Ubiquitin_Proteasome_system, DUB: USP rRNA processing Inositol phosphate metabolism RNA degradation protein tyrosine phosphatase activity 3'-5'-exoribonuclease activity endonuclease activity transferase activity, transferring acyl groups other than amino-acyl groups anchored component of plasma membrane | details |
| TissueCFM001666 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Spliceosome beta-galactosidase activity | details |
| TissueCFM001711 | Ubiquitin_Proteasome_system, E3 adaptor: F-box vesicle-mediated transport intracellular protein transport membrane fusion reproductive structure development single organism reproductive process post-embryonic development Basal transcription factors SNAP receptor activity protein tyrosine phosphatase activity | details |
| TissueCFM001736 | protein tyrosine phosphatase activity RNA polymerase II transcription corepressor activity histone deacetylase activity GTP-dependent protein binding myosin XI tail binding histone deacetylase complex trans-Golgi network membrane Legionellosis Mitophagy - yeast histone deacetylation negative regulation of transcription from RNA polymerase II promoter mitochondrial RNA metabolic process nucleus chromatin Transcription_related, Transcription factor: Orphans Ubiquitin_Proteasome_system, E2: UBC RNA modification peptidyl-tyrosine dephosphorylation poly(A) RNA binding RNA degradation ER to Golgi vesicle-mediated transport RNA processing small GTPase mediated signal transduction cytoplasm | details |
| TissueCFM001752 | Transcription_related, Transcription factor: C3H proteasome complex response to stimulus Proteasome RNA binding Transcription_related, Transcription factor: FAR1 metal ion binding | details |
| TissueCFM001784 | Ubiquitin_Proteasome_system, DUB: USP glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glycolytic process glucose metabolic process organic substance metabolic process cellular metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) | details |
Expression profiles
 Show details about module gene expression profiling |