TissueCFM001784's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, DUB: USP | 0.004778752 | ubs family |
| glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 0.012871389 | GO:0004365 |
| glycolytic process | 0.018677164 | GO:0006096 |
| glucose metabolic process | 0.018677164 | GO:0006006 |
| organic substance metabolic process | 0.018677164 | GO:0071704 |
| cellular metabolic process | 0.018677164 | GO:0044237 |
| gluconeogenesis I | 0.019505234 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.019505234 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004795 | AT1G33680 (2.00E-39) | KH domain-containing protein |
| CRO_T009094 | AT3G49600 (2.00E-22) | UBP26|ubiquitin-specific protease 26 |
| CRO_T017063 | AT1G48420 (4.00E-89) | ACD1|1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; ATACD1|A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; D-CDES|D-cysteine desulfhydrase |
| CRO_T024369 | AT3G04120 (6.00E-144) | GAPC|GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT; GAPC1|glyceraldehyde-3-phosphate dehydrogenase C subunit 1 |
| CRO_T027577 | AT5G55350 (1.00E-42) | MBOAT (membrane bound O-acyl transferase) family protein |
| CRO_T028697 | AT3G19840 (3.00E-155) | ATPRP40C|pre-mRNA-processing protein 40C |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000970 | chloroplast ascorbate glutathione cycle L-ascorbate degradation V defense response signaling pathway, resistance gene-dependent defense response signaling pathway, resistance gene-independent L-ascorbate peroxidase activity Ascorbate and aldarate metabolism Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001179 | D-myo-inositol-5-phosphate metabolism mRNA catabolic process rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) peptidyl-tyrosine dephosphorylation Transcription_related, Transcription factor: C3H Ubiquitin_Proteasome_system, DUB: USP rRNA processing Inositol phosphate metabolism RNA degradation protein tyrosine phosphatase activity 3'-5'-exoribonuclease activity endonuclease activity transferase activity, transferring acyl groups other than amino-acyl groups anchored component of plasma membrane | details |
| TissueCFM001262 | ascorbate glutathione cycle L-ascorbate degradation V Transcription_related, Transcription factor: FAR1 magnesium ion transmembrane transporter activity L-ascorbate peroxidase activity translation initiation factor binding regulation of translational initiation magnesium ion transmembrane transport formation of translation preinitiation complex magnesium ion transport eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex Ascorbate and aldarate metabolism transferase activity, transferring acyl groups translation initiation factor activity | details |
| TissueCFM001666 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Spliceosome beta-galactosidase activity | details |
| TissueCFM001667 | response to stimulus protein tyrosine phosphatase activity electron carrier activity | details |
| TissueCFM001723 | nucleus regulation of transcription, DNA-templated organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic actin filament organization trichome morphogenesis multidimensional cell growth transcription, DNA-templated retrograde vesicle-mediated transport, Golgi to ER protein-cysteine S-palmitoyltransferase activity threonine-type endopeptidase activity DNA-dependent ATPase activity Proteasome Protein export Regulation of actin cytoskeleton SNARE interactions in vesicular transport proteasome core complex Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, DUB: USP ER to Golgi vesicle-mediated transport positive regulation of transcription, DNA-templated chromatin binding | details |
| TissueCFM001733 | leaf development Ubiquitin_Proteasome_system, DUB: UCH shoot system morphogenesis histone H3-K9 demethylation negative regulation of histone acetylation response to brassinosteroid Transcription_related, Transcription regulator: Jumonji vesicle docking protein deubiquitination vegetative to reproductive phase transition of meristem unidimensional cell growth cellular metabolic process organic substance metabolic process vesicle fusion thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM001794 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) preribosome, small subunit precursor Ino80 complex Ubiquitin_Proteasome_system, DUB: USP transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex U3 snoRNA binding Purine metabolism ribonucleoside binding RNA polymerase III activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA repair | details |
| TissueCFM001817 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity ubiquitin-protein transferase activator activity anaphase-promoting complex binding glucose metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) glycolytic process regulation of catalytic activity ATP-dependent peptidase activity metalloendopeptidase activity NADP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD NAD binding Ubiquitin mediated proteolysis | details |
| TissueCFM001818 | protein import into mitochondrial intermembrane space mitochondrial protein processing protein complex assembly mitochondrial fusion cristae formation ATP-dependent peptidase activity metalloendopeptidase activity Transcription_related, Transcription regulator: SWI/SNF-SWI3 mitochondrial inner membrane chloroplast thylakoid membrane glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glucose metabolic process retrograde vesicle-mediated transport, Golgi to ER SNARE interactions in vesicular transport gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) spermine and spermidine degradation III sucrose biosynthesis I (from photosynthesis) cell division ER to Golgi vesicle-mediated transport glycolytic process DNA binding zinc ion binding NADP binding SNARE complex | details |
Expression profiles
 Show details about module gene expression profiling |