TissueCFM001234's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: IWS1 | 0.001417916 | TF family |
| gentiodelphin biosynthesis | 0.002657217 | plantCyc |
| cellular process | 0.017079564 | GO:0009987 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006284 | AT5G11700 (1.00E-167) | |
| CRO_T009597 | - | - |
| CRO_T010401 | - | - |
| CRO_T018305 | AT4G36980 (7.00E-117) | unknown protein |
| CRO_T020917 | AT4G19000 (6.00E-61) | ATIWS2|IWS2 (FROM YEAST INTERACTS WITH SPT6) |
| CRO_T023863 | AT5G42830 (5.00E-20) | HXXXD-type acyl-transferase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000650 | protein polyubiquitination L-ascorbate degradation IV D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) L-idonate catabolic process | details |
| TissueCFM001024 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex S-methyl-5-thio-α-D-ribose 1-phosphate degradation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-phenylalanine:2-oxoglutarate aminotransferase activity L-aspartate:2-oxoglutarate aminotransferase activity RNA polymerase III activity biosynthetic process Purine metabolism RNA transport | details |
| TissueCFM001233 | phenylethanol biosynthesis coenzyme binding | details |
| TissueCFM001235 | sterol 3-beta-glucosyltransferase activity Basal transcription factors Transcription_related, Transcription regulator: IWS1 sterol biosynthetic process seed coat development lipid glycosylation cold acclimation Transcription_related, Transcription factor: Trihelix seed germination cellulose biosynthetic process ligase activity cellular process flavonoid biosynthetic process flavonoid glucuronidation | details |
| TissueCFM001475 | 3-cyanoalanine hydratase activity adenylosuccinate synthase activity cyanoalanine nitrilase activity 'de novo' AMP biosynthetic process cyanide catabolic process detoxification of nitrogen compound positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity cyanide detoxification I L-asparagine degradation I cyclin-dependent protein serine/threonine kinase regulator activity Cyanoamino acid metabolism Transcriptional misregulation in cancers positive regulation of transcription from RNA polymerase II promoter superpathway of aspartate and asparagine biosynthesis cyclin-dependent protein kinase holoenzyme complex adenosine ribonucleotides de novo biosynthesis homogalacturonan degradation Purine metabolism | details |
| TissueCFM001716 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of cell differentiation regulation of RNA splicing nucleus eukaryotic translation initiation factor 3 complex, eIF3m translation initiation factor binding nucleotide binding nucleic acid binding regulation of translational initiation mRNA processing formation of translation preinitiation complex pollen germination zinc ion binding cytoplasmic mRNA processing body eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex proteasome complex Proteasome embryo development ending in seed dormancy RNA transport translation initiation factor activity | details |
| TissueCFM001744 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Biosynthesis of amino acids L,L-diaminopimelate aminotransferase activity RNA lariat debranching enzyme activity diaminopimelate decarboxylase activity Transcription_related, Transcription regulator: IWS1 Transcription_related, Transcription factor: Trihelix systemic acquired resistance, salicylic acid mediated signaling pathway RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |