TissueCFM001235's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sterol 3-beta-glucosyltransferase activity | 0.001950499 | GO:0016906 |
| Basal transcription factors | 0.007249122 | KEGG pathway |
| Transcription_related, Transcription regulator: IWS1 | 0.007798537 | TF family |
| sterol biosynthetic process | 0.009025287 | GO:0016126 |
| seed coat development | 0.009025287 | GO:0010214 |
| lipid glycosylation | 0.009025287 | GO:0030259 |
| cold acclimation | 0.009025287 | GO:0009631 |
| Transcription_related, Transcription factor: Trihelix | 0.013627286 | TF family |
| seed germination | 0.017134113 | GO:0009845 |
| cellulose biosynthetic process | 0.029265076 | GO:0030244 |
| ligase activity | 0.046007166 | GO:0016874 |
| cellular process | 0.048317543 | GO:0009987 |
| flavonoid biosynthetic process | 0.048317543 | GO:0009813 |
| flavonoid glucuronidation | 0.048317543 | GO:0052696 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004624 | AT3G15430 (4.00E-15) | Regulator of chromosome condensation (RCC1) family protein |
| CRO_T009597 | - | - |
| CRO_T012369 | AT1G43620 (2.00E-63) | TT15|TRANSPARENT TESTA 15 |
| CRO_T016548 | AT2G33550 (7.00E-84) | Homeodomain-like superfamily protein |
| CRO_T017744 | AT1G32750 (2.00E-51) | HAC13|HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HAF1|HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1; TAF1|TBP-ASSOCIATED FACTOR 1 |
| CRO_T020917 | AT4G19000 (6.00E-61) | ATIWS2|IWS2 (FROM YEAST INTERACTS WITH SPT6) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000461 | sterol 3-beta-glucosyltransferase activity serine C-palmitoyltransferase activity Sphingolipid metabolism daphnetin modification formation of glycosidic bonds, GlycosylTransferases: GTnc sterol biosynthetic process cold acclimation seed coat development lipid glycosylation sphingolipid biosynthesis (plants) Transcription_related, Transcription regulator: TRAF homogalacturonan degradation seed germination cellulose biosynthetic process biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB flavonoid glucuronidation flavonoid biosynthetic process | details |
| TissueCFM000650 | protein polyubiquitination L-ascorbate degradation IV D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) L-idonate catabolic process | details |
| TissueCFM001233 | phenylethanol biosynthesis coenzyme binding | details |
| TissueCFM001234 | Transcription_related, Transcription regulator: IWS1 gentiodelphin biosynthesis cellular process | details |
| TissueCFM001743 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate transport of virus in host, cell to cell systemic acquired resistance, salicylic acid mediated signaling pathway myosin complex response to cytokinin adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: Trihelix L,L-diaminopimelate aminotransferase activity motor activity Biosynthesis of amino acids Starch and sucrose metabolism | details |
| TissueCFM001744 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Biosynthesis of amino acids L,L-diaminopimelate aminotransferase activity RNA lariat debranching enzyme activity diaminopimelate decarboxylase activity Transcription_related, Transcription regulator: IWS1 Transcription_related, Transcription factor: Trihelix systemic acquired resistance, salicylic acid mediated signaling pathway RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |