TissueCFM000650's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein polyubiquitination | 0.004816751 | GO:0000209 |
| L-ascorbate degradation IV | 0.007796809 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.01554189 | plantCyc |
| flavin biosynthesis I (bacteria and plants) | 0.01554189 | plantCyc |
| L-idonate catabolic process | 0.019539703 | GO:0046183 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001612 | AT5G66750 (1.00E-19) | CHR01|CHROMATIN REMODELING 1; DDM1|DECREASED DNA METHYLATION 1; SOM1|SOMNIFEROUS 1 |
| CRO_T002199 | AT2G22430 (4.00E-25) | ATHB6|homeobox protein 6 |
| CRO_T002344 | AT1G65040 (1.00E-14) | AtHrd1B|homolog of yeast Hrd1 |
| CRO_T004624 | AT3G15430 (4.00E-15) | Regulator of chromosome condensation (RCC1) family protein |
| CRO_T005614 | - | - |
| CRO_T005886 | AT3G27785 (7.00E-16) | MYB118|myb domain protein 118; PGA37|PLANT GROWTH ACTIVATOR 37 |
| CRO_T008731 | AT1G68140 (3.00E-39) | Protein of unknown function (DUF1644) |
| CRO_T009597 | - | - |
| CRO_T011130 | AT1G54460 (2.00E-32) | TPX2 (targeting protein for Xklp2) protein family |
| CRO_T015174 | AT1G05630 (0) | 5PTASE13|inositol-polyphosphate 5-phosphatase 13 |
| CRO_T015591 | AT4G22110 (6.00E-21) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T021291 | AT5G03430 (0) | phosphoadenosine phosphosulfate (PAPS) reductase family protein |
| CRO_T024481 | AT3G44600 (6.00E-28) | CYP71|cyclophilin 71 |
| CRO_T030084 | AT5G38300 (4.00E-23) | unknown protein |
| CRO_T030244 | AT2G12550 (1.00E-80) | NUB1|homolog of human NUB1 |
| CRO_T030856 | AT5G24318 (2.00E-170) | O-Glycosyl hydrolases family 17 protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000055 | molybdenum cofactor biosynthesis | details |
| TissueCFM000425 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM001039 | Protein_kinases_phosphatases, PPC:4.5.5: Unknown Function Kinase Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family protein phosphorylation protein kinase activity organic cyclic compound binding heterocyclic compound binding | details |
| TissueCFM001233 | phenylethanol biosynthesis coenzyme binding | details |
| TissueCFM001234 | Transcription_related, Transcription regulator: IWS1 gentiodelphin biosynthesis cellular process | details |
| TissueCFM001235 | sterol 3-beta-glucosyltransferase activity Basal transcription factors Transcription_related, Transcription regulator: IWS1 sterol biosynthetic process seed coat development lipid glycosylation cold acclimation Transcription_related, Transcription factor: Trihelix seed germination cellulose biosynthetic process ligase activity cellular process flavonoid biosynthetic process flavonoid glucuronidation | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001369 | CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain cytokinesis by cell plate formation cell division site cell plate nuclear envelope RNA transport | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001422 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane polysaccharide binding carbohydrate metabolic process production of small RNA involved in gene silencing by RNA negative regulation of nitrogen compound metabolic process regulation of primary metabolic process negative regulation of cellular macromolecule biosynthetic process regulation of gene expression, epigenetic glucan endo-1,3-beta-D-glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds | details |
| TissueCFM001508 | D-myo-inositol (1,4,5)-trisphosphate degradation Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III exonuclease activity transmembrane receptor protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Starch and sucrose metabolism phosphatidylinositol dephosphorylation endonuclease activity | details |
| TissueCFM001509 | UDP-L-arabinose biosynthesis I (from UDP-xylose) D-myo-inositol (1,4,5)-trisphosphate degradation UDP-sugars interconversion UDP-glucose 4-epimerase activity exonuclease activity galactose metabolic process phosphatidylinositol dephosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III endonuclease activity Amino sugar and nucleotide sugar metabolism Starch and sucrose metabolism nucleic acid phosphodiester bond hydrolysis polysaccharide binding | details |
| TissueCFM001566 | ubiquitin protein ligase activity proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: RING TBP-class protein binding protein histidine kinase binding translation initiation factor binding proteasome-activating ATPase activity cellular response to sucrose stimulus secondary growth negative regulation of iron ion transport regulation of chlorophyll catabolic process cellular response to cold cellular response to abscisic acid stimulus regulation of meristem development Transcription_related, Transcription factor: Orphans phosphorelay sensor kinase activity leaf senescence regulation of seed germination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly response to osmotic stress cellular response to phosphate starvation peptidyl-histidine phosphorylation pollen germination phloem or xylem histogenesis regulation of flower development zinc ion binding ER-associated ubiquitin-dependent protein catabolic process eukaryotic translation initiation factor 3 complex, eIF3m cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex signal transduction by protein phosphorylation regulation of translational initiation formation of translation preinitiation complex protein polyubiquitination phosphorelay signal transduction system eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex defense response to bacterium protein ubiquitination involved in ubiquitin-dependent protein catabolic process translation initiation factor activity | details |
| TissueCFM001590 | D-myo-inositol (1,4,5)-trisphosphate degradation plasmodesma high-affinity secondary active ammonium transmembrane transporter activity exonuclease activity phosphatidylinositol dephosphorylation nitrogen utilization ammonium transmembrane transport organic cation transport Fanconi anemia pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Rho guanyl-nucleotide exchange factor activity DNA-directed DNA polymerase activity endonuclease activity damaged DNA binding DNA biosynthetic process positive regulation of GTPase activity polysaccharide binding Starch and sucrose metabolism nucleic acid phosphodiester bond hydrolysis DNA repair | details |
| TissueCFM001611 | auxin transport anther wall tapetum development animal organ development trichome morphogenesis Rho guanyl-nucleotide exchange factor activity 3-hydroxyisobutyryl-CoA hydrolase activity signal transducer activity Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3 adaptor: BTB positive regulation of GTPase activity signal transduction | details |
| TissueCFM001625 | details | |
| TissueCFM001626 | cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity calcium-dependent phospholipid binding transferase activity, transferring glycosyl groups | details |
| TissueCFM001646 | proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING zinc ion binding delta24-sterol reductase activity protein ubiquitination integral component of membrane lignin metabolic process 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis plant sterol biosynthesis Steroid biosynthesis plant-type secondary cell wall biogenesis plasma membrane unidimensional cell growth protein polyubiquitination brassinosteroid biosynthetic process Peroxisome protein ubiquitination involved in ubiquitin-dependent protein catabolic process vacuolar membrane oxidoreductase activity, acting on CH-OH group of donors | details |
| TissueCFM001704 | Base excision repair Lysine degradation DNA-3-methyladenine glycosylase activity base-excision repair glutamine metabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET | details |
| TissueCFM001715 | small GTPase mediated signal transduction RNA transport | details |
| TissueCFM001743 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate transport of virus in host, cell to cell systemic acquired resistance, salicylic acid mediated signaling pathway myosin complex response to cytokinin adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: Trihelix L,L-diaminopimelate aminotransferase activity motor activity Biosynthesis of amino acids Starch and sucrose metabolism | details |
| TissueCFM001816 | Drug metabolism - cytochrome P450 Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) xylogalacturonan biosynthesis phosphatidylinositol dephosphorylation exonuclease activity N,N-dimethylaniline monooxygenase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis NADP binding oxidation-reduction process flavin adenine dinucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |