TissueCFM001238's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 | 0.004253747 | kinase family |
| hydroxymethylglutaryl-CoA reductase (NADPH) activity | 0.005212381 | GO:0004420 |
| metal ion transmembrane transporter activity | 0.005212381 | GO:0046873 |
| peroxisomal membrane | 0.005849767 | GO:0005778 |
| Pyruvate metabolism | 0.009563862 | KEGG pathway |
| mevalonate pathway I | 0.012667941 | plantCyc |
| Terpenoid backbone biosynthesis | 0.01377981 | KEGG pathway |
| phosphate acquisition | 0.014112933 | plantCyc |
| sterol biosynthetic process | 0.01541477 | GO:0016126 |
| coenzyme A metabolic process | 0.01541477 | GO:0015936 |
| homogalacturonan degradation | 0.015873854 | plantCyc |
| isoprenoid biosynthetic process | 0.024386889 | GO:0008299 |
| acid phosphatase activity | 0.026011885 | GO:0003993 |
| NADP binding | 0.029878328 | GO:0050661 |
| metal ion transport | 0.039404155 | GO:0030001 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001151 | - | - |
| CRO_T005903 | AT4G25150 (8.00E-25) | HAD superfamily, subfamily IIIB acid phosphatase |
| CRO_T019904 | AT1G78980 (0) | SRF5|STRUBBELIG-receptor family 5 |
| CRO_T022297 | - | - |
| CRO_T024292 | AT1G16010 (2.00E-105) | MGT2|magnesium transporter 2 |
| CRO_T030213 | AT1G76490 (0) | HMG1|hydroxy methylglutaryl CoA reductase 1; HMGR1|3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1; MAD3|miRNA action deficient 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000535 | peroxisomal membrane hydroxymethylglutaryl-CoA reductase (NADPH) activity mevalonate pathway I Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 sterol biosynthetic process coenzyme A metabolic process Pyruvate metabolism isoprenoid biosynthetic process homogalacturonan degradation Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, DUB: OTU NADP binding | details |
| TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
| TissueCFM000648 | ascorbate glutathione cycle L-ascorbate degradation V Ascorbate and aldarate metabolism Pyruvate metabolism phosphatidate metabolism, as a signaling molecule seed maturation seed germination chloroplast organization chloroplast stroma | details |
| TissueCFM001200 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase biotin biosynthesis from 8-amino-7-oxononanoate I protein retention in ER lumen ER retention sequence binding DNA metabolic process ATP-dependent helicase activity | details |
| TissueCFM001239 | phosphate acquisition Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III tau-protein kinase activity Transcription_related, Transcription factor: FAR1 isomerase activity acid phosphatase activity | details |
Expression profiles
 Show details about module gene expression profiling |