TissueCFM001200's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase | 0.001447391 | kinase family |
| biotin biosynthesis from 8-amino-7-oxononanoate I | 0.001654015 | plantCyc |
| protein retention in ER lumen | 0.008616954 | GO:0006621 |
| ER retention sequence binding | 0.022482863 | GO:0046923 |
| DNA metabolic process | 0.028365447 | GO:0006259 |
| ATP-dependent helicase activity | 0.033694407 | GO:0008026 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001151 | - | - |
| CRO_T002503 | AT1G17620 (1.00E-32) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T011567 | AT5G50350 (1.00E-06) | unknown protein |
| CRO_T013058 | AT1G60930 (2.00E-18) | ATRECQ4B|RECQ helicase L4B |
| CRO_T015090 | AT1G75760 (1.00E-103) | ER lumen protein retaining receptor family protein |
| CRO_T026843 | AT1G21250 (2.00E-137) | WAK1|cell wall-associated kinase 1 |
| CRO_T029633 | AT4G32360 (2.00E-123) | Pyridine nucleotide-disulphide oxidoreductase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
| TissueCFM000926 | cytoplasmic microtubule organization oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant microtubule-severing ATPase activity cytoplasmic part cellular oxidant detoxification | details |
| TissueCFM001158 | Proteasome chiasma assembly positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process cytosolic proteasome complex proteasome regulatory particle, base subcomplex nuclear proteasome complex chromosome proteasome-activating ATPase activity TBP-class protein binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane | details |
| TissueCFM001238 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 hydroxymethylglutaryl-CoA reductase (NADPH) activity metal ion transmembrane transporter activity peroxisomal membrane Pyruvate metabolism mevalonate pathway I Terpenoid backbone biosynthesis phosphate acquisition sterol biosynthetic process coenzyme A metabolic process homogalacturonan degradation isoprenoid biosynthetic process acid phosphatase activity NADP binding metal ion transport | details |
| TissueCFM001239 | phosphate acquisition Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III tau-protein kinase activity Transcription_related, Transcription factor: FAR1 isomerase activity acid phosphatase activity | details |
| TissueCFM001309 | pre-mRNA cleavage required for polyadenylation L-phenylalanine biosynthetic process L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) mRNA cleavage and polyadenylation specificity factor complex arogenate dehydratase activity prephenate dehydratase activity DNA metabolic process Transcription_related, Transcription factor: HB nucleotide binding ATP-dependent helicase activity mRNA binding amino acid binding Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids mRNA surveillance pathway | details |
Expression profiles
 Show details about module gene expression profiling |