TissueCFM001257's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.004386353 | cazy family |
| Transcription_related, Transcription factor: NF-YA | 0.004386353 | TF family |
| galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | 0.005212381 | GO:0015018 |
| phospholipid:diacylglycerol acyltransferase activity | 0.005212381 | GO:0046027 |
| cation transmembrane transporter activity | 0.006947787 | GO:0008324 |
| system development | 0.007383886 | GO:0048731 |
| triglyceride biosynthetic process | 0.007383886 | GO:0019432 |
| cation transmembrane transport | 0.008364078 | GO:0098655 |
| O-acyltransferase activity | 0.008464488 | GO:0008374 |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.009253238 | plantCyc |
| xylan biosynthesis | 0.009253238 | plantCyc |
| Glycerolipid metabolism | 0.009362512 | KEGG pathway |
| diacylglycerol and triacylglycerol biosynthesis | 0.015551047 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001587 | AT2G29410 (5.00E-40) | MTPB1|metal tolerance protein B1 |
| CRO_T010617 | AT4G36890 (2.00E-161) | IRX14|irregular xylem 14 |
| CRO_T013520 | AT5G37290 (2.00E-77) | ARM repeat superfamily protein |
| CRO_T021797 | AT3G44830 (0) | Lecithin:cholesterol acyltransferase family protein |
| CRO_T022572 | AT2G19130 (2.00E-108) | S-locus lectin protein kinase family protein |
| CRO_T026977 | AT1G19680 (1.00E-07) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000498 | glucose and glucose-1-phosphate degradation mannitol biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein targeting to peroxisome protein import into chloroplast stroma ABC transporters Peroxisome integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex protein import into mitochondrial matrix Transcription_related, Transcription factor: SBP protein channel activity | details |
| TissueCFM000637 | L-alpha-amino acid transmembrane transport L-amino acid transport cation transmembrane transporter activity L-amino acid transmembrane transporter activity cation transmembrane transport DNA biosynthetic process DNA-directed DNA polymerase activity | details |
| TissueCFM000695 | Hedgehog signaling pathway Protein_kinases_phosphatases, PPC:1.12.1: Leucine Rich Repeat Kinase X very long chain fatty acid biosynthesis I ABC transporters integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex G-protein coupled receptor signaling pathway protein import into chloroplast stroma protein import into mitochondrial matrix chloroplast plasma membrane G-protein beta/gamma-subunit complex binding protein channel activity | details |
| TissueCFM000884 | S-methyl-5'-thioadenosine degradation I L-glutamate transmembrane transporter activity phospholipid:diacylglycerol acyltransferase activity S-methyl-5-thioribose kinase activity L-arginine import L-lysine transmembrane transport L-amino acid transport sulfate reduction L-glutamate import triglyceride biosynthetic process methionine biosynthetic process translational termination L-lysine transmembrane transporter activity phospholipid remodeling (phosphatidylcholine, yeast) translation release factor activity, codon specific Transcription_related, Transcription factor: NF-YA O-acyltransferase activity diacylglycerol and triacylglycerol biosynthesis Sulfur metabolism Cysteine and methionine metabolism Glycerolipid metabolism oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor ribosome binding | details |
| TissueCFM001099 | L-phenylalanine catabolic process cinnamic acid biosynthetic process Phenylalanine metabolism Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase trans-cinnamoyl-CoA biosynthesis phenylpropanoid biosynthesis, initial reactions adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phenylalanine ammonia-lyase activity protein kinase activity ammonium transmembrane transporter activity ammonium transmembrane transport NF-kappa B signaling pathway suberin monomers biosynthesis very long chain fatty acid biosynthesis I | details |
| TissueCFM001187 | formation of glycosidic bonds, GlycosylTransferases: GTnc NADP+ binding steroid dehydrogenase activity alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts Basal transcription factors cation transmembrane transporter activity response to absence of light response to toxic substance response to red light response to far red light calcium-transporting ATPase activity cation transmembrane transport response to cold DNA-templated transcription, initiation calcium ion transmembrane transport nuclear body response to water deprivation response to salt stress translational initiation | details |
| TissueCFM001258 | cation transmembrane transporter activity alkaloid metabolic process cation transmembrane transport chaperone binding S-adenosylmethionine-dependent methyltransferase activity transferase activity, transferring acyl groups cytoplasm | details |
| TissueCFM001325 | xylan biosynthesis system development innate immune response formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: EIL galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity MAPK signaling pathway - plant Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidyl-tyrosine phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |