TissueCFM001099's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-phenylalanine catabolic process | 0.009769893 | GO:0006559 |
| cinnamic acid biosynthetic process | 0.009769893 | GO:0009800 |
| Phenylalanine metabolism | 0.01115372 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase | 0.01115372 | kinase family |
| trans-cinnamoyl-CoA biosynthesis | 0.012176035 | plantCyc |
| phenylpropanoid biosynthesis, initial reactions | 0.012176035 | plantCyc |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.012323979 | cazy family |
| phenylalanine ammonia-lyase activity | 0.012827369 | GO:0045548 |
| protein kinase activity | 0.012827369 | GO:0004672 |
| ammonium transmembrane transporter activity | 0.013018827 | GO:0008519 |
| ammonium transmembrane transport | 0.014319017 | GO:0072488 |
| NF-kappa B signaling pathway | 0.018254818 | KEGG pathway |
| suberin monomers biosynthesis | 0.029735181 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.029735181 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013529 | AT2G37040 (0) | PAL1|PHE ammonia lyase 1 |
| CRO_T015866 | - | - |
| CRO_T019325 | AT3G06470 (7.00E-75) | GNS1/SUR4 membrane protein family |
| CRO_T020139 | - | - |
| CRO_T022107 | AT2G23770 (2.00E-68) | LYK4|LysM-containing receptor-like kinase 4 |
| CRO_T022572 | AT2G19130 (2.00E-108) | S-locus lectin protein kinase family protein |
| CRO_T030889 | - | - |
| CRO_T031910 | - | - |
| CRO_T033387 | AT5G56240 (3.00E-09) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000016 | NADH dehydrogenase activity Oxidative phosphorylation methylenetetrahydrofolate dehydrogenase (NADP+) activity guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity GTP diphosphokinase activity methenyltetrahydrofolate cyclohydrolase activity shikimate O-hydroxycinnamoyltransferase activity response to starvation guanosine tetraphosphate metabolic process one-carbon metabolic process folic acid-containing compound biosynthetic process | details |
| TissueCFM000041 | details | |
| TissueCFM000150 | binding very long chain fatty acid biosynthesis I | details |
| TissueCFM000246 | details | |
| TissueCFM000360 | transcriptional repressor complex autophagosome pre-autophagosomal structure piecemeal microautophagy of nucleus protein localization to pre-autophagosomal structure mitophagy late nucleophagy Cell cycle Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Autophagy - animal Insulin signaling pathway MAPK signaling pathway | details |
| TissueCFM000376 | DNA integration very long chain fatty acid biosynthesis I | details |
| TissueCFM000424 | regulation of transcription from RNA polymerase II promoter very long chain fatty acid biosynthesis I RNA polymerase II regulatory region sequence-specific DNA binding | details |
| TissueCFM000523 | intracellular protein transport 1-phosphatidylinositol 4-kinase activity phosphatidylinositol-mediated signaling membrane coat COPII vesicle coat phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis very long chain fatty acid biosynthesis I ER to Golgi vesicle-mediated transport Inositol phosphate metabolism Lysosome vesicle-mediated transport | details |
| TissueCFM000553 | very long chain fatty acid biosynthesis I | details |
| TissueCFM000637 | L-alpha-amino acid transmembrane transport L-amino acid transport cation transmembrane transporter activity L-amino acid transmembrane transporter activity cation transmembrane transport DNA biosynthetic process DNA-directed DNA polymerase activity | details |
| TissueCFM000695 | Hedgehog signaling pathway Protein_kinases_phosphatases, PPC:1.12.1: Leucine Rich Repeat Kinase X very long chain fatty acid biosynthesis I ABC transporters integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex G-protein coupled receptor signaling pathway protein import into chloroplast stroma protein import into mitochondrial matrix chloroplast plasma membrane G-protein beta/gamma-subunit complex binding protein channel activity | details |
| TissueCFM000866 | very long chain fatty acid biosynthesis I protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination | details |
| TissueCFM000905 | very long chain fatty acid biosynthesis I | details |
| TissueCFM001043 | intrinsic component of membrane Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV trans-cinnamoyl-CoA biosynthesis phenylpropanoid biosynthesis, initial reactions L-phenylalanine catabolic process cinnamic acid biosynthetic process Phenylalanine metabolism ammonium transmembrane transport ABC transporters NF-kappa B signaling pathway suberin monomers biosynthesis phenylalanine ammonia-lyase activity ammonium transmembrane transporter activity protein catabolic process | details |
| TissueCFM001257 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NF-YA galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity phospholipid:diacylglycerol acyltransferase activity cation transmembrane transporter activity system development triglyceride biosynthetic process cation transmembrane transport O-acyltransferase activity phospholipid remodeling (phosphatidylcholine, yeast) xylan biosynthesis Glycerolipid metabolism diacylglycerol and triacylglycerol biosynthesis | details |
| TissueCFM001258 | cation transmembrane transporter activity alkaloid metabolic process cation transmembrane transport chaperone binding S-adenosylmethionine-dependent methyltransferase activity transferase activity, transferring acyl groups cytoplasm | details |
| TissueCFM001305 | DNA demethylation DNA demethylase activity Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription regulator: TRAF NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB drug transmembrane transport DNA repair Plant hormone signal transduction | details |
| TissueCFM001320 | very long chain fatty acid biosynthesis I | details |
| TissueCFM001427 | vesicle-mediated transport intracellular protein transport transcriptional repressor complex Golgi apparatus part intracellular transport Cell cycle vacuolar transport Lysosome Transcription_related, Transcription factor: MYB-related very long chain fatty acid biosynthesis I membrane coat | details |
| TissueCFM001449 | phosphatidylethanolamine biosynthesis I FoxO signaling pathway Protein digestion and absorption Ubiquitin_Proteasome_system, DUB: ULP Ubiquitin_Proteasome_system, DUB: USP Ubiquitin_Proteasome_system, E3: HECT very long chain fatty acid biosynthesis I Glycerophospholipid metabolism | details |
Expression profiles
 Show details about module gene expression profiling |