TissueCFM001281's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP701A | 0.000472806 | CYP450 family |
| ent-kaur-16-en-19-al oxidase activity | 0.00586887 | GO:0052617 |
| ent-kaurene oxidase activity | 0.00586887 | GO:0052615 |
| ent-kaur-16-en-19-ol oxidase activity | 0.00586887 | GO:0052616 |
| pantothenate kinase activity | 0.006601795 | GO:0004594 |
| fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) | 0.007875215 | plantCyc |
| phosphopantothenate biosynthesis I | 0.007875215 | plantCyc |
| unsaturated, even numbered fatty acid β-oxidation | 0.010491602 | plantCyc |
| GA12 biosynthesis | 0.010812753 | plantCyc |
| regulation of plant-type hypersensitive response | 0.011778271 | GO:0010363 |
| ent-kaurene oxidation to kaurenoic acid | 0.011778271 | GO:0010241 |
| coenzyme A biosynthetic process | 0.01308426 | GO:0015937 |
| gibberellin biosynthetic process | 0.015692994 | GO:0009686 |
| photorespiration | 0.015692994 | plantCyc |
| Pantothenate and CoA biosynthesis | 0.026967032 | KEGG pathway |
| threonine-type endopeptidase activity | 0.033393787 | GO:0004298 |
| cytochrome-c oxidase activity | 0.036593282 | GO:0004129 |
| Diterpenoid biosynthesis | 0.039025438 | KEGG pathway |
| chloroplast outer membrane | 0.039078961 | GO:0009707 |
| proteasome core complex | 0.039078961 | GO:0005839 |
| Proteasome | 0.041195809 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001528 | AT5G25900 (0) | ATKO1|ENT-KAURENE OXIDASE 1; CYP701A3|CYTOCHROME P450 701 A3; GA3|GA requiring 3 |
| CRO_T007406 | AT4G32180 (0) | ATPANK2|pantothenate kinase 2 |
| CRO_T014559 | AT1G22450 (6.00E-22) | ATCOX6B2|CYTOCHROME C OXIDASE 6B2; COX6B|cytochrome C oxidase 6B |
| CRO_T017078 | AT1G71780 (1.00E-59) | unknown protein |
| CRO_T021488 | AT5G40580 (5.00E-21) | PBB2|20S proteasome beta subunit PBB2 |
| CRO_T023002 | - | - |
| CRO_T023223 | AT5G52640 (2.00E-48) | AtHsp90-1|HEAT SHOCK PROTEIN 90-1; ATHSP90.1|heat shock protein 90.1; HSP81-1|HEAT SHOCK PROTEIN 81-1; HSP83|HEAT SHOCK PROTEIN 83 |
| CRO_T023326 | AT3G02650 (2.00E-17) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000236 | Cytochrome_P450, Cytochrome P450: CYP75B hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc oxidation-reduction process coenzyme A biosynthetic process Glycosaminoglycan degradation Pantothenate and CoA biosynthesis Propanoate metabolism Cytochrome_P450, Cytochrome P450: CYP71B 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity pantothenate kinase activity cinnamoyl-CoA reductase activity costunolide biosynthesis gossypetin metabolism luteolin biosynthesis phosphopantothenate biosynthesis I 2-oxoisovalerate decarboxylation to isobutanoyl-CoA flavonol biosynthesis protein domain specific binding Phenylpropanoid biosynthesis secondary metabolite biosynthetic process coenzyme binding vacuole | details |
| TissueCFM001164 | Transcription_related, Transcription regulator: MBF1 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: USP 1,3-beta-D-glucan synthase complex cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides regulation of nucleic acid-templated transcription interstrand cross-link repair positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process thiol-dependent ubiquitin-specific protease activity nuclease activity 1,3-beta-D-glucan synthase activity proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding (1->3)-beta-D-glucan biosynthetic process protein deubiquitination ER-associated ubiquitin-dependent protein catabolic process Fanconi anemia pathway Proteasome nucleic acid phosphodiester bond hydrolysis response to stress ubiquitin-dependent protein catabolic process unfolded protein binding | details |
| TissueCFM001390 | histone acetyltransferase complex pantothenate kinase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Pantothenate and CoA biosynthesis Propanoate metabolism phosphopantothenate biosynthesis I cinnamoyl-CoA reductase activity coenzyme A biosynthetic process 2-oxoisovalerate decarboxylation to isobutanoyl-CoA protein domain specific binding histone acetylation Phenylpropanoid biosynthesis coenzyme binding | details |
| TissueCFM001516 | chromoplast carotenoid biosynthetic process trans-lycopene biosynthesis II (plants) Carotenoid biosynthesis Cytochrome_P450, Cytochrome P450: CYP701A oxidation-reduction process ent-kaurene oxidation to kaurenoic acid ent-kaurene oxidase activity ent-kaur-16-en-19-ol oxidase activity ent-kaur-16-en-19-al oxidase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity carotene 7,8-desaturase activity PSII associated light-harvesting complex II catabolic process 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene gibberellin biosynthetic process chloroplast envelope Mitophagy - yeast Propanoate metabolism neurosporene biosynthesis cinnamoyl-CoA reductase activity 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA GA12 biosynthesis Diterpenoid biosynthesis chloroplast outer membrane Phenylpropanoid biosynthesis ATP-dependent peptidase activity metalloendopeptidase activity coenzyme binding | details |
| TissueCFM001841 | UDP-D-xylose biosynthesis vacuolar membrane regulation of plant-type hypersensitive response interstrand cross-link repair hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides UDP-glucuronate decarboxylase activity nuclease activity proteasome core complex threonine-type endopeptidase activity Fanconi anemia pathway Proteasome Amino sugar and nucleotide sugar metabolism nucleic acid phosphodiester bond hydrolysis proteolysis involved in cellular protein catabolic process S-adenosylmethionine-dependent methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |