TissueCFM001308's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| wobble position cytosine ribose methylation | 0.001477651 | GO:0002131 |
| wobble position uridine ribose methylation | 0.001477651 | GO:0002132 |
| chloroplast envelope | 0.003168762 | GO:0009941 |
| chloroplast stroma | 0.003769087 | GO:0009570 |
| xylogalacturonan biosynthesis | 0.004071992 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006191018 | cazy family |
| alditol:NADP+ 1-oxidoreductase activity | 0.010119663 | GO:0004032 |
| thylakoid | 0.020626059 | GO:0009579 |
| transferase activity, transferring acyl groups | 0.042989428 | GO:0016746 |
| peptidase activity | 0.042989428 | GO:0008233 |
| methyltransferase activity | 0.048747921 | GO:0008168 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005938 | AT1G04690 (2.00E-17) | KAB1|potassium channel beta subunit 1 |
| CRO_T015034 | - | - |
| CRO_T018867 | AT3G07620 (2.00E-21) | Exostosin family protein |
| CRO_T026140 | AT5G64260 (1.00E-79) | EXL2|EXORDIUM like 2 |
| CRO_T028607 | - | - |
| CRO_T030812 | AT4G25370 (3.00E-58) | Double Clp-N motif protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001219 | methyltransferase activity sulfurtransferase activity tRNA wobble position uridine thiolation wobble position cytosine ribose methylation wobble position uridine ribose methylation alditol:NADP+ 1-oxidoreductase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions thylakoid lumen extrinsic component of membrane photosystem II oxygen evolving complex Protein processing in endoplasmic reticulum Photosynthesis | details |
| TissueCFM001307 | wobble position cytosine ribose methylation wobble position uridine ribose methylation protein transmembrane transport P-P-bond-hydrolysis-driven protein transmembrane transporter activity chloroplast outer membrane RNA transport translational initiation thylakoid | details |
| TissueCFM001592 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis metal ion binding protein kinase activity N,N-dimethylaniline monooxygenase activity Protein export Plant-pathogen interaction | details |
| TissueCFM001714 | methyltransferase activity wobble position cytosine ribose methylation wobble position uridine ribose methylation tRNA wobble position uridine thiolation sulfurtransferase activity alditol:NADP+ 1-oxidoreductase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions xylogalacturonan biosynthesis photosystem II oxygen evolving complex extrinsic component of membrane thylakoid lumen transferase activity, transferring acyl groups Photosynthesis | details |
| TissueCFM001801 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Plant-pathogen interaction membrane transferase activity, transferring acyl groups N,N-dimethylaniline monooxygenase activity NADP binding acid phosphatase activity | details |
| TissueCFM001809 | Drug metabolism - cytochrome P450 phytate degradation I pyruvate fermentation to ethanol II xylogalacturonan biosynthesis Glycolysis / Gluconeogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY Plant-pathogen interaction N,N-dimethylaniline monooxygenase activity thiamine pyrophosphate binding carboxy-lyase activity | details |
| TissueCFM001816 | Drug metabolism - cytochrome P450 Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) xylogalacturonan biosynthesis phosphatidylinositol dephosphorylation exonuclease activity N,N-dimethylaniline monooxygenase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis NADP binding oxidation-reduction process flavin adenine dinucleotide binding | details |
| TissueCFM001834 | Drug metabolism - cytochrome P450 floral organ morphogenesis gibberellin mediated signaling pathway positive regulation of gibberellic acid mediated signaling pathway phytate degradation I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc benzoate biosynthesis I (CoA-dependent, β-oxidative) N,N-dimethylaniline monooxygenase activity acid phosphatase activity NADP binding Plant hormone signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |