TissueCFM001834's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Drug metabolism - cytochrome P450 | 0.002659181 | KEGG pathway |
| floral organ morphogenesis | 0.00347492 | GO:0048444 |
| gibberellin mediated signaling pathway | 0.00347492 | GO:0010476 |
| positive regulation of gibberellic acid mediated signaling pathway | 0.00347492 | GO:0009939 |
| phytate degradation I | 0.011197978 | plantCyc |
| xylogalacturonan biosynthesis | 0.011197978 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.018573055 | cazy family |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.020388144 | plantCyc |
| N,N-dimethylaniline monooxygenase activity | 0.039017827 | GO:0004499 |
| acid phosphatase activity | 0.039017827 | GO:0003993 |
| NADP binding | 0.039837771 | GO:0050661 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006015 | AT4G24530 (0) | O-fucosyltransferase family protein |
| CRO_T013489 | AT3G52820 (2.00E-78) | ATPAP22|PURPLE ACID PHOSPHATASE 22 |
| CRO_T018867 | AT3G07620 (2.00E-21) | Exostosin family protein |
| CRO_T024234 | AT2G33230 (4.00E-14) | YUC7|YUCCA 7 |
| CRO_T026388 | AT3G63010 (1.00E-156) | GID1B|GA INSENSITIVE DWARF1B |
| CRO_T031938 | AT5G64430 (4.00E-72) | Octicosapeptide/Phox/Bem1p family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001112 | floral organ morphogenesis gibberellin mediated signaling pathway positive regulation of gibberellic acid mediated signaling pathway trans-lycopene biosynthesis II (plants) benzoate biosynthesis I (CoA-dependent, β-oxidative) Carotenoid biosynthesis Plant hormone signal transduction | details |
| TissueCFM001142 | gibberellin mediated signaling pathway floral organ morphogenesis positive regulation of gibberellic acid mediated signaling pathway benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: MYB microtubule-based movement Plant hormone signal transduction kinesin complex | details |
| TissueCFM001270 | Drug metabolism - cytochrome P450 plastoglobule serine-type endopeptidase inhibitor activity negative regulation of endopeptidase activity response to wounding N,N-dimethylaniline monooxygenase activity ATPase activity NADP binding flavin adenine dinucleotide binding | details |
| TissueCFM001308 | wobble position cytosine ribose methylation wobble position uridine ribose methylation chloroplast envelope chloroplast stroma xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc alditol:NADP+ 1-oxidoreductase activity thylakoid transferase activity, transferring acyl groups peptidase activity methyltransferase activity | details |
| TissueCFM001457 | Drug metabolism - cytochrome P450 sulfate adenylyltransferase (ATP) activity 4-coumarate-CoA ligase activity adenylylsulfate kinase activity sulfate activation for sulfonation sulfate reduction II (assimilatory) phenylpropanoid metabolic process Phenylalanine metabolism Sulfur metabolism N,N-dimethylaniline monooxygenase activity formation of glycosidic bonds, GlycosylTransferases: GTnc 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Protein export Flavonoid biosynthesis sulfate assimilation suberin monomers biosynthesis NADP binding Phenylpropanoid biosynthesis protein transport | details |
| TissueCFM001464 | floral organ morphogenesis negative regulation of ribosome biogenesis positive regulation of gibberellic acid mediated signaling pathway gibberellin mediated signaling pathway cuticular wax biosynthesis thioredoxin pathway UDP-L-arabinose biosynthesis I (from UDP-xylose) UDP-sugars interconversion 5S rRNA binding UDP-glucose 4-epimerase activity ribosomal large subunit binding galactose metabolic process negative regulation of translation benzoate biosynthesis I (CoA-dependent, β-oxidative) fatty acid biosynthetic process | details |
| TissueCFM001592 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis metal ion binding protein kinase activity N,N-dimethylaniline monooxygenase activity Protein export Plant-pathogen interaction | details |
| TissueCFM001693 | positive regulation of gibberellic acid mediated signaling pathway floral organ morphogenesis glutathione catabolic process gibberellin mediated signaling pathway glutathione gamma-glutamylcysteinyltransferase activity gamma-glutamyltransferase activity glutathione degradation phytochelatins biosynthesis Arachidonic acid metabolism phytate degradation I Ubiquitin_Proteasome_system, E1: ThiF formation of glycosidic bonds, GlycosylTransferases: GTnc acid phosphatase activity benzoate biosynthesis I (CoA-dependent, β-oxidative) Plant hormone signal transduction dephosphorylation vacuole | details |
| TissueCFM001714 | methyltransferase activity wobble position cytosine ribose methylation wobble position uridine ribose methylation tRNA wobble position uridine thiolation sulfurtransferase activity alditol:NADP+ 1-oxidoreductase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions xylogalacturonan biosynthesis photosystem II oxygen evolving complex extrinsic component of membrane thylakoid lumen transferase activity, transferring acyl groups Photosynthesis | details |
| TissueCFM001801 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Plant-pathogen interaction membrane transferase activity, transferring acyl groups N,N-dimethylaniline monooxygenase activity NADP binding acid phosphatase activity | details |
| TissueCFM001804 | Drug metabolism - cytochrome P450 serine-type endopeptidase inhibitor activity negative regulation of endopeptidase activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription factor: WRKY response to wounding Plant-pathogen interaction N,N-dimethylaniline monooxygenase activity multicellular organism development | details |
| TissueCFM001809 | Drug metabolism - cytochrome P450 phytate degradation I pyruvate fermentation to ethanol II xylogalacturonan biosynthesis Glycolysis / Gluconeogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY Plant-pathogen interaction N,N-dimethylaniline monooxygenase activity thiamine pyrophosphate binding carboxy-lyase activity | details |
| TissueCFM001816 | Drug metabolism - cytochrome P450 Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) xylogalacturonan biosynthesis phosphatidylinositol dephosphorylation exonuclease activity N,N-dimethylaniline monooxygenase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis NADP binding oxidation-reduction process flavin adenine dinucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |