TissueCFM001336's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll a degradation II | 0.002951635 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase | 0.004874734 | kinase family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009737807 | cazy family |
| Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | 0.021559186 | kinase family |
| translational termination | 0.026786091 | GO:0006415 |
| plastid organization | 0.026786091 | GO:0009657 |
| recognition of pollen | 0.033888474 | GO:0048544 |
| protein serine/threonine kinase activity | 0.039176996 | GO:0004674 |
| ribosome binding | 0.039176996 | GO:0043022 |
| heat shock protein binding | 0.039176996 | GO:0031072 |
| nucleotide binding | 0.039176996 | GO:0000166 |
| protein serine/threonine/tyrosine kinase activity | 0.039176996 | GO:0004712 |
| translation release factor activity, codon specific | 0.039176996 | GO:0016149 |
| endonuclease activity | 0.039176996 | GO:0004519 |
| protein phosphorylation | 0.041925243 | GO:0006468 |
| RNA processing | 0.045614925 | GO:0006396 |
| nucleic acid phosphodiester bond hydrolysis | 0.045614925 | GO:0090305 |
| microtubule-based movement | 0.045614925 | GO:0007018 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001336 | AT3G28510 (7.00E-134) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T004457 | AT1G19360 (5.00E-07) | RRA3|reduced residual arabinose 3 |
| CRO_T017084 | AT1G34300 (1.00E-83) | lectin protein kinase family protein |
| CRO_T019999 | AT3G23400 (3.00E-68) | FIB4|fibrillin 4 |
| CRO_T022699 | AT3G47650 (7.00E-28) | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| CRO_T025180 | AT1G67660 (2.00E-93) | Restriction endonuclease, type II-like superfamily protein |
| CRO_T025257 | AT3G53570 (9.00E-38) | AFC1|FUS3-complementing gene 1 |
| CRO_T027198 | AT1G56350 (3.00E-34) | Peptide chain release factor 2 |
| CRO_T027600 | - | - |
| CRO_T030977 | AT1G25500 (4.00E-157) | Plasma-membrane choline transporter family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000495 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase negative regulation of cellular process protein serine/threonine/tyrosine kinase activity Transcription_related, Transcription factor: bZIP Plant hormone signal transduction Ubiquitin_Proteasome_system, E3: U-box | details |
| TissueCFM000666 | formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination plastid organization glycerol catabolic process gluconeogenesis glyceraldehyde-3-phosphate biosynthetic process triose-phosphate isomerase activity phosphate-containing compound metabolic process Transcription_related, Transcription factor: bZIP inorganic diphosphatase activity translation release factor activity, codon specific Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) ribosome binding Cell cycle - Caulobacter glycolytic process RNA processing | details |
| TissueCFM001142 | gibberellin mediated signaling pathway floral organ morphogenesis positive regulation of gibberellic acid mediated signaling pathway benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: MYB microtubule-based movement Plant hormone signal transduction kinesin complex | details |
| TissueCFM001690 | Ribosome translation Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase structural constituent of ribosome geraniol and geranial biosynthesis cell morphogenesis protein serine/threonine/tyrosine kinase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Phenylpropanoid biosynthesis lignin biosynthetic process cell wall organization or biogenesis O-acetyltransferase activity | details |
| TissueCFM001773 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) plastoquinol-9 biosynthesis I vitamin E biosynthesis (tocopherols) heme biosynthetic process viral envelope chloroplast part Arginine and proline metabolism Porphyrin and chlorophyll metabolism Ubiquinone and other terpenoid-quinone biosynthesis Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB L-ascorbic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |