TissueCFM001374's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Sulfur relay system | 0.001063594 | KEGG pathway |
| molybdenum cofactor biosynthesis | 0.003187954 | plantCyc |
| Transcription_related, Transcription regulator: Jumonji | 0.003187954 | TF family |
| negative regulation of histone acetylation | 0.008824425 | GO:0035067 |
| molybdenum incorporation into molybdenum-molybdopterin complex | 0.008824425 | GO:0018315 |
| histone H3-K9 demethylation | 0.008824425 | GO:0033169 |
| response to brassinosteroid | 0.008824425 | GO:0009741 |
| vacuole organization | 0.012351456 | GO:0007033 |
| molybdopterin synthase activity | 0.012871389 | GO:0030366 |
| early endosome membrane | 0.012981097 | GO:0031901 |
| molybdopterin synthase complex | 0.012981097 | GO:0019008 |
| Mo-molybdopterin cofactor biosynthetic process | 0.013231748 | GO:0006777 |
| protein targeting to vacuole | 0.022667917 | GO:0006623 |
| leaf development | 0.024474286 | GO:0048366 |
| vegetative to reproductive phase transition of meristem | 0.024474286 | GO:0010228 |
| unidimensional cell growth | 0.025543605 | GO:0009826 |
| vesicle fusion | 0.025618 | GO:0006906 |
| exocytosis | 0.026399052 | GO:0006887 |
| auxin-activated signaling pathway | 0.026399052 | GO:0009734 |
| ER to Golgi vesicle-mediated transport | 0.026399052 | GO:0006888 |
| SNARE binding | 0.041723977 | GO:0000149 |
| SNAP receptor activity | 0.041723977 | GO:0005484 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000747 | AT1G19430 (4.00E-73) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T004139 | AT5G23890 (3.00E-170) | LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope |
| CRO_T008141 | AT4G10100 (4.00E-25) | CNX7|co-factor for nitrate, reductase and xanthine dehydrogenase 7 |
| CRO_T017208 | AT5G54750 (1.00E-90) | Transport protein particle (TRAPP) component |
| CRO_T020284 | AT3G48430 (3.00E-111) | JMJ12|Jumonji domain-containing protein 12; REF6|relative of early flowering 6 |
| CRO_T027355 | AT2G32670 (6.00E-73) | ATVAMP725|vesicle-associated membrane protein 725 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000908 | D-cysteine catabolic process histone H3-K9 demethylation negative regulation of histone acetylation GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity 1-aminocyclopropane-1-carboxylate deaminase activity D-cysteine desulfhydrase activity response to brassinosteroid Cellular senescence ethylene biosynthetic process Transcription_related, Transcription regulator: Jumonji vegetative to reproductive phase transition of meristem leaf development cobalt ion binding unidimensional cell growth Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development zinc ion binding | details |
| TissueCFM001302 | Sulfur relay system molybdenum cofactor biosynthesis Transcription_related, Transcription regulator: Jumonji early endosome membrane molybdopterin synthase complex molybdenum incorporation into molybdenum-molybdopterin complex negative regulation of histone acetylation histone H3-K9 demethylation response to brassinosteroid molybdopterin synthase activity vacuole organization Mo-molybdopterin cofactor biosynthetic process protein targeting to vacuole leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth vesicle fusion auxin-activated signaling pathway exocytosis ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding SNARE complex | details |
| TissueCFM001521 | Inositol phosphate metabolism 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Transcription_related, Transcription factor: HSF ureidoglycolate hydrolase activity 1-phosphatidylinositol-4-phosphate 5-kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001733 | leaf development Ubiquitin_Proteasome_system, DUB: UCH shoot system morphogenesis histone H3-K9 demethylation negative regulation of histone acetylation response to brassinosteroid Transcription_related, Transcription regulator: Jumonji vesicle docking protein deubiquitination vegetative to reproductive phase transition of meristem unidimensional cell growth cellular metabolic process organic substance metabolic process vesicle fusion thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM001830 | Legionellosis Ubiquitin_Proteasome_system, E3 adaptor: DDB1 Transcription_related, Transcription regulator: Jumonji 1-aminocyclopropane-1-carboxylate deaminase activity myosin XI tail binding D-cysteine desulfhydrase activity GTP-dependent protein binding response to brassinosteroid histone H3-K9 demethylation D-cysteine catabolic process negative regulation of histone acetylation trans-Golgi network membrane ethylene biosynthetic process calcium-dependent cysteine-type endopeptidase activity cobalt ion binding leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth mRNA surveillance pathway ER to Golgi vesicle-mediated transport small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |