TissueCFM001733's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| leaf development | 0.000612938 | GO:0048366 |
| Ubiquitin_Proteasome_system, DUB: UCH | 0.003900248 | ubs family |
| shoot system morphogenesis | 0.008607429 | GO:0010016 |
| histone H3-K9 demethylation | 0.008607429 | GO:0033169 |
| negative regulation of histone acetylation | 0.008607429 | GO:0035067 |
| response to brassinosteroid | 0.008607429 | GO:0009741 |
| Transcription_related, Transcription regulator: Jumonji | 0.011682605 | TF family |
| vesicle docking | 0.028608468 | GO:0048278 |
| protein deubiquitination | 0.028608468 | GO:0016579 |
| vegetative to reproductive phase transition of meristem | 0.028608468 | GO:0010228 |
| unidimensional cell growth | 0.028608468 | GO:0009826 |
| cellular metabolic process | 0.028608468 | GO:0044237 |
| organic substance metabolic process | 0.028608468 | GO:0071704 |
| vesicle fusion | 0.028608468 | GO:0006906 |
| thiol-dependent ubiquitin-specific protease activity | 0.042871675 | GO:0004843 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004139 | AT5G23890 (3.00E-170) | LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope |
| CRO_T007070 | AT4G17730 (6.00E-63) | SYP23|syntaxin of plants 23 |
| CRO_T008132 | AT1G65650 (4.00E-138) | UCH2|Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 |
| CRO_T017063 | AT1G48420 (4.00E-89) | ACD1|1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; ATACD1|A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; D-CDES|D-cysteine desulfhydrase |
| CRO_T020284 | AT3G48430 (3.00E-111) | JMJ12|Jumonji domain-containing protein 12; REF6|relative of early flowering 6 |
| CRO_T020895 | AT5G53620 (1.00E-146) | unknown protein |
| CRO_T022045 | AT4G12560 (3.00E-28) | CPR1|CONSTITUTIVE EXPRESSER OF PR GENES 1; CPR30|CONSTITUTIVE EXPRESSER OF PR GENES 30 |
| CRO_T031871 | AT1G43130 (4.00E-103) | LCV2|like COV 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000908 | D-cysteine catabolic process histone H3-K9 demethylation negative regulation of histone acetylation GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity 1-aminocyclopropane-1-carboxylate deaminase activity D-cysteine desulfhydrase activity response to brassinosteroid Cellular senescence ethylene biosynthetic process Transcription_related, Transcription regulator: Jumonji vegetative to reproductive phase transition of meristem leaf development cobalt ion binding unidimensional cell growth Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development zinc ion binding | details |
| TissueCFM001017 | endopeptidase activity anaphase-promoting complex binding ubiquitin-protein transferase activator activity SNAP receptor activity SNARE binding Ubiquitin mediated proteolysis regulation of catalytic activity vesicle fusion vesicle docking Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001018 | vesicle fusion vesicle docking SNARE binding SNAP receptor activity intracellular protein transport Protein processing in endoplasmic reticulum | details |
| TissueCFM001205 | Ubiquitin_Proteasome_system, DUB: UCH thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis Transcription_related, Transcription factor: HSF protein deubiquitination leaf development ubiquitin-dependent protein catabolic process | details |
| TissueCFM001302 | Sulfur relay system molybdenum cofactor biosynthesis Transcription_related, Transcription regulator: Jumonji early endosome membrane molybdopterin synthase complex molybdenum incorporation into molybdenum-molybdopterin complex negative regulation of histone acetylation histone H3-K9 demethylation response to brassinosteroid molybdopterin synthase activity vacuole organization Mo-molybdopterin cofactor biosynthetic process protein targeting to vacuole leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth vesicle fusion auxin-activated signaling pathway exocytosis ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding SNARE complex | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001374 | Sulfur relay system molybdenum cofactor biosynthesis Transcription_related, Transcription regulator: Jumonji negative regulation of histone acetylation molybdenum incorporation into molybdenum-molybdopterin complex histone H3-K9 demethylation response to brassinosteroid vacuole organization molybdopterin synthase activity early endosome membrane molybdopterin synthase complex Mo-molybdopterin cofactor biosynthetic process protein targeting to vacuole leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth vesicle fusion exocytosis auxin-activated signaling pathway ER to Golgi vesicle-mediated transport SNARE binding SNAP receptor activity | details |
| TissueCFM001384 | Golgi medial cisterna cis-Golgi network MAPK signaling pathway SNARE interactions in vesicular transport regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport protein transport translational initiation ER to Golgi vesicle-mediated transport vesicle fusion SNARE binding SNAP receptor activity SNARE complex Ubiquitin_Proteasome_system, E3 adaptor: F-box translation initiation factor activity Golgi membrane | details |
| TissueCFM001434 | uracil degradation I (reductive) beta-ureidopropionase activity uracil catabolic process CIA complex iron-sulfur cluster assembly Pyrimidine metabolism Plant-pathogen interaction transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001506 | Ubiquitin_Proteasome_system, DUB: UCH triacylglycerol degradation transmembrane receptor protein kinase activity thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis leaf development protein deubiquitination | details |
| TissueCFM001718 | ESCRT I complex transcription factor TFIID complex C-5 methylation of cytosine protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA polymerase II transcriptional preinitiation complex assembly histone acetyltransferase binding DNA (cytosine-5-)-methyltransferase activity protein complex binding transcription factor binding transcription coactivator activity transcription regulatory region DNA binding Cellular senescence regulation of transcription from RNA polymerase II promoter chromatin binding Basal transcription factors Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM001784 | Ubiquitin_Proteasome_system, DUB: USP glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity glycolytic process glucose metabolic process organic substance metabolic process cellular metabolic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) | details |
| TissueCFM001826 | Transcription_related, Transcription regulator: Jumonji response to stress single-organism metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001830 | Legionellosis Ubiquitin_Proteasome_system, E3 adaptor: DDB1 Transcription_related, Transcription regulator: Jumonji 1-aminocyclopropane-1-carboxylate deaminase activity myosin XI tail binding D-cysteine desulfhydrase activity GTP-dependent protein binding response to brassinosteroid histone H3-K9 demethylation D-cysteine catabolic process negative regulation of histone acetylation trans-Golgi network membrane ethylene biosynthetic process calcium-dependent cysteine-type endopeptidase activity cobalt ion binding leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth mRNA surveillance pathway ER to Golgi vesicle-mediated transport small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |