TissueCFM001420's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of reductive pentose-phosphate cycle | 0.002955301 | GO:0080153 |
| protein complex | 0.00974673 | GO:0043234 |
| Plant-pathogen interaction | 0.013402699 | KEGG pathway |
| iron-sulfur cluster assembly | 0.017197274 | GO:0016226 |
| chloroplast organization | 0.017197274 | GO:0009658 |
| iron-sulfur cluster binding | 0.033933268 | GO:0051536 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008313 | AT5G15640 (2.00E-20) | Mitochondrial substrate carrier family protein |
| CRO_T023454 | AT3G20970 (1.00E-09) | ATNFU2|NFU DOMAIN PROTEIN 2; NFU4|NFU domain protein 4 |
| CRO_T026658 | AT4G03290 (1.00E-23) | EF hand calcium-binding protein family |
| CRO_T026766 | AT1G76560 (1.00E-31) | CP12-3|CP12 domain-containing protein 3 |
| CRO_T031474 | AT2G31340 (0) | emb1381|embryo defective 1381 |
| CRO_T032936 | AT5G04610 (2.00E-19) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000473 | phytochelatins biosynthesis nuclear pore distribution chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery RNA export from nucleus transcription from RNA polymerase III promoter nuclear pore outer ring condensed chromosome kinetochore structural constituent of nuclear pore RNA polymerase III activity nucleocytoplasmic transporter activity iron-sulfur cluster binding iron-sulfur cluster assembly protein import into nucleus chloroplast organization DNA-directed RNA polymerase III complex Purine metabolism RNA transport | details |
| TissueCFM000559 | negative regulation of reductive pentose-phosphate cycle protein targeting to ER Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein export Transcription_related, Transcription factor: WRKY signal recognition particle, endoplasmic reticulum targeting protein complex peptidyl-tyrosine phosphorylation signal recognition particle binding | details |
| TissueCFM001333 | nuclear cap binding complex long-day photoperiodism, flowering mRNA transport RNA splicing, via endonucleolytic cleavage and ligation primary miRNA processing mRNA cis splicing, via spliceosome RNA cap binding transcription from RNA polymerase III promoter Transcription_related, Transcription factor: HB tRNA processing DNA-directed RNA polymerase III complex iron-sulfur cluster assembly DNA binding iron-sulfur cluster binding RNA polymerase III activity chloroplast organization rRNA processing response to abscisic acid | details |
| TissueCFM001550 | Plant-pathogen interaction cation binding single-organism cellular process protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TissueCFM001591 | Chagas disease (American trypanosomiasis) serine-type exopeptidase activity chloroplast organization iron-sulfur cluster assembly iron-sulfur cluster binding response to stress | details |
| TissueCFM001632 | Neuroactive ligand-receptor interaction xylogalacturonan biosynthesis iron-sulfur cluster assembly chloroplast organization formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: HB iron-sulfur cluster binding Ribosome biogenesis in eukaryotes response to oxidative stress | details |
Expression profiles
 Show details about module gene expression profiling |