TissueCFM001333's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nuclear cap binding complex | 0.007084392 | GO:0005846 |
| long-day photoperiodism, flowering | 0.007701867 | GO:0048574 |
| mRNA transport | 0.007701867 | GO:0051028 |
| RNA splicing, via endonucleolytic cleavage and ligation | 0.007701867 | GO:0000394 |
| primary miRNA processing | 0.007701867 | GO:0031053 |
| mRNA cis splicing, via spliceosome | 0.009240601 | GO:0045292 |
| RNA cap binding | 0.011262632 | GO:0000339 |
| transcription from RNA polymerase III promoter | 0.01154768 | GO:0006383 |
| Transcription_related, Transcription factor: HB | 0.015414579 | TF family |
| tRNA processing | 0.019780233 | GO:0008033 |
| DNA-directed RNA polymerase III complex | 0.02122493 | GO:0005666 |
| iron-sulfur cluster assembly | 0.023064667 | GO:0016226 |
| DNA binding | 0.025608691 | GO:0003677 |
| iron-sulfur cluster binding | 0.025608691 | GO:0051536 |
| RNA polymerase III activity | 0.025608691 | GO:0001056 |
| chloroplast organization | 0.029869502 | GO:0009658 |
| rRNA processing | 0.031474246 | GO:0006364 |
| response to abscisic acid | 0.045957935 | GO:0009737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004427 | AT2G20230 (2.00E-17) | Tetraspanin family protein |
| CRO_T006176 | - | - |
| CRO_T009512 | AT2G13540 (2.00E-54) | ABH1|ABA HYPERSENSITIVE 1; CBP80|CAP-BINDING PROTEIN 80; ENS|ENSALADA |
| CRO_T015561 | AT5G52490 (1.00E-61) | Fibrillarin family protein |
| CRO_T023454 | AT3G20970 (1.00E-09) | ATNFU2|NFU DOMAIN PROTEIN 2; NFU4|NFU domain protein 4 |
| CRO_T024910 | AT3G49000 (3.00E-35) | RNA polymerase III subunit RPC82 family protein |
| CRO_T028451 | AT2G22430 (2.00E-23) | ATHB6|homeobox protein 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000473 | phytochelatins biosynthesis nuclear pore distribution chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery RNA export from nucleus transcription from RNA polymerase III promoter nuclear pore outer ring condensed chromosome kinetochore structural constituent of nuclear pore RNA polymerase III activity nucleocytoplasmic transporter activity iron-sulfur cluster binding iron-sulfur cluster assembly protein import into nucleus chloroplast organization DNA-directed RNA polymerase III complex Purine metabolism RNA transport | details |
| TissueCFM001420 | negative regulation of reductive pentose-phosphate cycle protein complex Plant-pathogen interaction iron-sulfur cluster assembly chloroplast organization iron-sulfur cluster binding | details |
| TissueCFM001591 | Chagas disease (American trypanosomiasis) serine-type exopeptidase activity chloroplast organization iron-sulfur cluster assembly iron-sulfur cluster binding response to stress | details |
| TissueCFM001632 | Neuroactive ligand-receptor interaction xylogalacturonan biosynthesis iron-sulfur cluster assembly chloroplast organization formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: HB iron-sulfur cluster binding Ribosome biogenesis in eukaryotes response to oxidative stress | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001712 | ribosomal large subunit assembly phospholipid desaturation nucleolus rRNA primary transcript binding RNA binding maturation of 5.8S rRNA Ribosome biogenesis in eukaryotes chloroplast inner membrane preribosome, large subunit precursor tRNA processing maturation of LSU-rRNA rRNA processing ubiquitin protein ligase binding | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
Expression profiles
 Show details about module gene expression profiling |