TissueCFM001632's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Neuroactive ligand-receptor interaction | 0.001595745 | KEGG pathway |
| xylogalacturonan biosynthesis | 0.004071992 | plantCyc |
| iron-sulfur cluster assembly | 0.017025301 | GO:0016226 |
| chloroplast organization | 0.017025301 | GO:0009658 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.018573055 | cazy family |
| Transcription_related, Transcription factor: HB | 0.019840987 | TF family |
| iron-sulfur cluster binding | 0.022395957 | GO:0051536 |
| Ribosome biogenesis in eukaryotes | 0.022469848 | KEGG pathway |
| response to oxidative stress | 0.030350829 | GO:0006979 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005128 | AT4G16745 (6.00E-20) | Exostosin family protein |
| CRO_T013112 | AT2G21195 (1.00E-10) | unknown protein |
| CRO_T021014 | AT1G15420 (7.00E-17) | |
| CRO_T022844 | AT2G47770 (1.00E-42) | ATTSPO|TSPO(outer membrane tryptophan-rich sensory protein)-related |
| CRO_T023454 | AT3G20970 (1.00E-09) | ATNFU2|NFU DOMAIN PROTEIN 2; NFU4|NFU domain protein 4 |
| CRO_T028451 | AT2G22430 (2.00E-23) | ATHB6|homeobox protein 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000473 | phytochelatins biosynthesis nuclear pore distribution chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery RNA export from nucleus transcription from RNA polymerase III promoter nuclear pore outer ring condensed chromosome kinetochore structural constituent of nuclear pore RNA polymerase III activity nucleocytoplasmic transporter activity iron-sulfur cluster binding iron-sulfur cluster assembly protein import into nucleus chloroplast organization DNA-directed RNA polymerase III complex Purine metabolism RNA transport | details |
| TissueCFM001333 | nuclear cap binding complex long-day photoperiodism, flowering mRNA transport RNA splicing, via endonucleolytic cleavage and ligation primary miRNA processing mRNA cis splicing, via spliceosome RNA cap binding transcription from RNA polymerase III promoter Transcription_related, Transcription factor: HB tRNA processing DNA-directed RNA polymerase III complex iron-sulfur cluster assembly DNA binding iron-sulfur cluster binding RNA polymerase III activity chloroplast organization rRNA processing response to abscisic acid | details |
| TissueCFM001420 | negative regulation of reductive pentose-phosphate cycle protein complex Plant-pathogen interaction iron-sulfur cluster assembly chloroplast organization iron-sulfur cluster binding | details |
| TissueCFM001591 | Chagas disease (American trypanosomiasis) serine-type exopeptidase activity chloroplast organization iron-sulfur cluster assembly iron-sulfur cluster binding response to stress | details |
Expression profiles
 Show details about module gene expression profiling |