TissueCFM000007's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000764 | - | - |
| CRO_T002220 | AT5G47550 (1.00E-28) | Cystatin/monellin superfamily protein |
| CRO_T003442 | - | - |
| CRO_T005590 | AT5G26594 (1.00E-26) | ARR24|response regulator 24 |
| CRO_T005695 | AT5G67590 (8.00E-59) | FRO1|FROSTBITE1 |
| CRO_T007537 | AT5G01650 (1.00E-47) | Tautomerase/MIF superfamily protein |
| CRO_T007670 | - | - |
| CRO_T007720 | AT5G25310 (3.00E-141) | Exostosin family protein |
| CRO_T008140 | AT3G22680 (6.00E-45) | RDM1|RNA-DIRECTED DNA METHYLATION 1 |
| CRO_T008491 | - | - |
| CRO_T013985 | AT1G07950 (3.00E-36) | MED22B|Surfeit locus protein 5 subunit 22 of Mediator complex |
| CRO_T014278 | AT5G06820 (3.00E-166) | SRF2|STRUBBELIG-receptor family 2 |
| CRO_T015658 | AT1G21690 (2.00E-20) | EMB1968|embryo defective 1968; RFC4|replication factor C 4 |
| CRO_T015779 | AT1G74670 (2.00E-14) | GASA6|GA-stimulated Arabidopsis 6 |
| CRO_T017879 | - | - |
| CRO_T017914 | AT2G13370 (5.00E-36) | CHR5|chromatin remodeling 5 |
| CRO_T019349 | AT1G47530 (2.00E-124) | MATE efflux family protein |
| CRO_T019728 | AT3G45830 (0) | unknown protein |
| CRO_T019826 | AT2G13610 (2.00E-17) | ABCG5|ATP-binding cassette G5 |
| CRO_T019903 | - | - |
| CRO_T019929 | AT2G25700 (5.00E-25) | ASK3|SKP1-like 3 |
| CRO_T021511 | AT1G34370 (8.00E-24) | STOP1|sensitive to proton rhizotoxicity 1 |
| CRO_T021985 | AT1G65240 (1.00E-21) | Eukaryotic aspartyl protease family protein |
| CRO_T022260 | AT5G07990 (5.00E-81) | CYP75B1|CYTOCHROME P450 75B1; TT7|TRANSPARENT TESTA 7 |
| CRO_T027656 | AT2G31215 (2.00E-15) | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| CRO_T027775 | AT5G49610 (7.00E-16) | F-box family protein |
| CRO_T028562 | - | - |
| CRO_T029205 | AT3G04960 (5.00E-23) | Domain of unknown function (DUF3444) |
| CRO_T030016 | - | - |
| CRO_T032630 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000200 | details | |
| TissueCFM000237 | Glycolysis / Gluconeogenesis aldose 1-epimerase activity postreplication repair hexose metabolic process positive regulation of catalytic activity double-strand break repair via homologous recombination protein processing Smc5-Smc6 complex mitochondrial respiratory chain complex I drug transmembrane transport | details |
| TissueCFM000238 | flavonoid 3',5'-hydroxylase activity phosphopantetheine binding primary shoot apical meristem specification anthocyanin-containing compound biosynthetic process oxidoreductase activity, acting on NAD(P)H FK506 binding aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis leucopelargonidin and leucocyanidin biosynthesis NAD/NADH phosphorylation and dephosphorylation syringetin biosynthesis electron transport chain chaperone-mediated protein folding protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Oxidative phosphorylation protein binding | details |
| TissueCFM000291 | Ubiquitin_Proteasome_system, E3: UBR-box RNA splicing, via transesterification reactions protein N-linked glycosylation via asparagine second spliceosomal transesterification activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) Ino80 complex ADP binding proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism plant-type cell wall organization unidimensional cell growth ATP synthesis coupled proton transport spliceosomal complex | details |
| TissueCFM000315 | formation of glycosidic bonds, GlycosylTransferases: GTnc positive regulation of translational initiation recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex mRNA export from nucleus in response to heat stress transcription initiation from RNA polymerase II promoter nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Phenylpropanoid biosynthesis geraniol dehydrogenase activity single-stranded RNA binding cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity translation initiation factor binding Transcription_related, Transcription factor: C3H cytoplasmic mRNA processing body mitochondrial respiratory chain complex I DNA-directed RNA polymerase II, core complex single-stranded DNA binding DNA-directed RNA polymerase activity Purine metabolism | details |
| TissueCFM000346 | secondary shoot formation meristem initiation formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: GRAS | details |
| TissueCFM000347 | formation of glycosidic bonds, GlycosylTransferases: GTnc organic cyclic compound binding heterocyclic compound binding | details |
| TissueCFM000568 | eumelanin biosynthesis mitochondrial envelope isomerase activity cytochrome-c oxidase activity hydrogen ion transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000720 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 anthocyanin-containing compound biosynthetic process flavonoid 3',5'-hydroxylase activity electron transport chain oxidoreductase activity, acting on NAD(P)H hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis leucopelargonidin and leucocyanidin biosynthesis NAD/NADH phosphorylation and dephosphorylation syringetin biosynthesis Oxidative phosphorylation | details |
| TissueCFM001114 | Oxidative phosphorylation mitochondrial envelope mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) mitochondrial respiratory chain complex I hydrogen ion transmembrane transporter activity carboxylic ester hydrolase activity cytochrome-c oxidase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation benzoate biosynthesis I (CoA-dependent, β-oxidative) NADH dehydrogenase (ubiquinone) activity | details |
| TissueCFM001444 | formaldehyde catabolic process endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) S-formylglutathione hydrolase activity formaldehyde oxidation II (glutathione-dependent) electron transport chain aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation oxidoreductase activity, acting on NAD(P)H carboxylic ester hydrolase activity protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity Viral carcinogenesis protein heterodimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |