TissueCFM001500's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: RB | 0.000354636 | TF family |
| TGF-beta signaling pathway | 0.001595745 | KEGG pathway |
| calcium-dependent cysteine-type endopeptidase activity | 0.00521161 | GO:0004198 |
| alternative oxidase activity | 0.00521161 | GO:0009916 |
| cysteine-type endopeptidase inhibitor activity | 0.00521161 | GO:0004869 |
| regulation of DNA endoreduplication | 0.005781393 | GO:0032875 |
| proteolysis | 0.005781393 | GO:0006508 |
| negative regulation of cell division | 0.005781393 | GO:0051782 |
| negative regulation of endopeptidase activity | 0.005781393 | GO:0010951 |
| Cell cycle | 0.006936134 | KEGG pathway |
| aerobic respiration III (alternative oxidase pathway) | 0.007072836 | plantCyc |
| regulation of transcription from RNA polymerase II promoter | 0.030738562 | GO:0006357 |
| peptidase activity | 0.041514609 | GO:0008233 |
| Spliceosome | 0.04413962 | KEGG pathway |
| carbohydrate binding | 0.045070501 | GO:0030246 |
| mitochondrial inner membrane | 0.049669823 | GO:0005743 |
| integral component of membrane | 0.049669823 | GO:0016021 |
| respiratory chain | 0.049669823 | GO:0070469 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006883 | AT5G53400 (2.00E-82) | BOB1|BOBBER1 |
| CRO_T007036 | AT3G12490 (2.00E-69) | ATCYS6|PHYTOCYSTATIN 6; ATCYSB|cystatin B |
| CRO_T012784 | AT3G22370 (3.00E-81) | AOX1A|alternative oxidase 1A; HSR3|hyper-sensitivity-related 3 |
| CRO_T014489 | AT3G12280 (0) | ATRBR1|RETINOBLASTOMA-RELATED PROTEIN 1; RB1|RETINOBLASTOMA 1; RBR|RETINOBLASTOMA-RELATED; RBR1|retinoblastoma-related 1 |
| CRO_T016964 | AT2G33435 (4.00E-43) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T022316 | AT1G55350 (0) | DEK1|DEFECTIVE KERNEL 1; EMB1275|embryo defective 1275; EMB80|EMBRYO DEFECTIVE 80 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001338 | Betalain biosynthesis Tyrosine metabolism inosine nucleosidase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen cellular aromatic compound metabolic process negative regulation of endopeptidase activity inosine catabolic process adenine and adenosine salvage II guanosine nucleotides degradation I pyrimidine ribonucleosides salvage II pyrimidine salvage pathway thioredoxin pathway cysteine-type endopeptidase inhibitor activity ferrous iron binding adenosine nucleotides degradation I UDP-glucosyltransferase activity protein disulfide oxidoreductase activity | details |
| TissueCFM001710 | ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: USP protein deubiquitination interstrand cross-link repair 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Fanconi anemia pathway Proteasome thiol-dependent ubiquitin-specific protease activity nuclease activity thiol-dependent ubiquitinyl hydrolase activity 1,3-beta-D-glucan synthase activity 1,3-beta-D-glucan synthase complex proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |