TissueCFM001512's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 1,3-β-D-glucan biosynthesis | 0.002834156 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003722304 | cazy family |
| nuclear pore inner ring | 0.005059831 | GO:0044611 |
| microtubule organizing center | 0.005059831 | GO:0005815 |
| cellular component assembly | 0.006771466 | GO:0022607 |
| cell cycle process | 0.006771466 | GO:0022402 |
| microtubule cytoskeleton organization | 0.007893626 | GO:0000226 |
| double-strand break repair via homologous recombination | 0.007893626 | GO:0000724 |
| (1->3)-beta-D-glucan biosynthetic process | 0.007893626 | GO:0006075 |
| nuclear pore organization | 0.007893626 | GO:0006999 |
| protein import into nucleus, docking | 0.007893626 | GO:0000059 |
| regulation of ARF protein signal transduction | 0.007893626 | GO:0032012 |
| 1,3-beta-D-glucan synthase complex | 0.009438739 | GO:0000148 |
| ARF guanyl-nucleotide exchange factor activity | 0.012153238 | GO:0005086 |
| 1,3-beta-D-glucan synthase activity | 0.012153238 | GO:0003843 |
| structural constituent of nuclear pore | 0.012153238 | GO:0017056 |
| Transcription_related, Transcription regulator: SNF2 | 0.012195236 | TF family |
| positive regulation of GTPase activity | 0.021504725 | GO:0043547 |
| RNA transport | 0.026828752 | KEGG pathway |
| organic cyclic compound binding | 0.033728128 | GO:0097159 |
| heterocyclic compound binding | 0.033728128 | GO:1901363 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003637 | AT1G05570 (0) | CALS1|callose synthase 1; GSL6|GLUCAN SYNTHASE-LIKE 6 |
| CRO_T008202 | AT5G22750 (0) | RAD5; RAD5A|DNA/RNA helicase protein |
| CRO_T009865 | AT1G01960 (0) | EDA10|embryo sac development arrest 10 |
| CRO_T026287 | AT3G43610 (4.00E-45) | Spc97 / Spc98 family of spindle pole body (SBP) component |
| CRO_T027765 | AT5G51200 (0) | EMB3142|EMBRYO DEFECTIVE 3142 |
| CRO_T029965 | AT1G03070 (2.00E-64) | LFG4|LIFEGUARD 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001167 | histone H3-K4 methylation histone H3-K36 methylation negative regulation of flower development Cul4-RING E3 ubiquitin ligase complex RNA degradation | details |
| TissueCFM001209 | cytoskeleton-dependent intracellular transport regulation of microtubule-based process protein localization activation of GTPase activity regulation of vesicle fusion Rab GTPase binding ATP-dependent microtubule motor activity, plus-end-directed GTPase activator activity mRNA splicing, via spliceosome microtubule-based movement root development Spliceosome microtubule kinesin complex spliceosomal complex endomembrane system microtubule binding | details |
| TissueCFM001254 | ARF guanyl-nucleotide exchange factor activity regulation of ARF protein signal transduction positive regulation of GTPase activity formation of glycosidic bonds, GlycosylTransferases: GTnc UDP-glucosylation negative regulation of protein kinase activity attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation tetracyclic triterpenoid biosynthetic process meiotic sister chromatid cohesion, centromeric protein kinase inhibitor activity UDP-glucose:glycoprotein glucosyltransferase activity isoleucyl-tRNA aminoacylation cycloartenol synthase activity mangrove triterpenoid biosynthesis plant sterol biosynthesis II isoleucine-tRNA ligase activity double-stranded RNA binding carboxypeptidase activity aminoacyl-tRNA editing activity regulation of translational fidelity protein kinase binding plant sterol biosynthesis protein glycosylation | details |
| TissueCFM001838 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process Ubiquitin_Proteasome_system, E2: UBC 1,3-beta-D-glucan synthase complex protein ubiquitination 1,3-beta-D-glucan synthase activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |