TissueCFM001615's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI | 0.002480253 | kinase family |
| cortical cytoskeleton organization | 0.00434333 | GO:0030865 |
| glucose catabolic process | 0.00434333 | GO:0006007 |
| protein targeting | 0.00434333 | GO:0006605 |
| Transcriptional misregulation in cancers | 0.007971652 | KEGG pathway |
| microtubule cytoskeleton organization | 0.009114929 | GO:0000226 |
| spindle | 0.018197904 | GO:0005819 |
| nuclear chromatin | 0.018197904 | GO:0000790 |
| nucleosome | 0.021545588 | GO:0000786 |
| mRNA surveillance pathway | 0.022207137 | KEGG pathway |
| protein dephosphorylation | 0.045585186 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014558 | AT4G40030 (1.00E-74) | H3.3|histone 3.3 |
| CRO_T018737 | AT2G39370 (3.00E-35) | MAKR4|MEMBRANE-ASSOCIATED KINASE REGULATOR 4 |
| CRO_T024073 | AT5G18580 (8.00E-144) | EMB40|EMBRYO DEFECTIVE 40; FASS|FASS 1; GDO|GORDO; TON2|TONNEAU 2 |
| CRO_T025930 | AT5G59220 (5.00E-19) | HAI1|highly ABA-induced PP2C gene 1; SAG113|senescence associated gene 113 |
| CRO_T026498 | AT5G37790 (5.00E-167) | Protein kinase superfamily protein |
| CRO_T027247 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000091 | Ubiquitin_Proteasome_system, E3 adaptor: DWD mitochondrial respiratory chain complex IV assembly glucose catabolic process protein targeting mitochondrial respiratory chain complex I assembly glucan 1,3-alpha-glucosidase activity DNA replication factor A complex protein import into mitochondrial matrix Prp19 complex mitochondrial inner membrane presequence translocase complex Cul4-RING E3 ubiquitin ligase complex Transcriptional misregulation in cancers precatalytic spliceosome catalytic step 2 spliceosome nucleosome N-Glycan biosynthesis mRNA splicing, via spliceosome | details |
| TissueCFM000501 | glucose catabolic process protein targeting Transcriptional misregulation in cancers N-terminal protein amino acid acetylation peptide alpha-N-acetyltransferase activity protein heterodimerization activity nucleosome protein acetyltransferase complex thylakoid | details |
| TissueCFM000549 | protein phosphorylation Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) protein kinase activity ATP binding Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI Transcription_related, Transcription regulator: MBF1 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase integral component of membrane protein phosphatase type 2A complex plasma membrane nuclear chromatin | details |
| TissueCFM000659 | callose deposition in phloem sieve plate sucrose metabolic process Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) protein phosphorylation Starch and sucrose metabolism | details |
| TissueCFM000803 | protein phosphorylation protein kinase activity ATP binding integral component of membrane Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription regulator: MBF1 microtubule minus-end binding transmembrane receptor protein tyrosine kinase activity protein serine/threonine kinase activity | details |
| TissueCFM001047 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane cytoskeleton HAUS complex spindle microtubule hydrolase activity, hydrolyzing O-glycosyl compounds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI microtubule minus-end binding protein kinase activity spindle assembly carbohydrate metabolic process Starch and sucrose metabolism | details |
| TissueCFM001053 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, DUB: USP response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity protein deubiquitination response to osmotic stress oligopeptide transport peptidyl-tyrosine dephosphorylation response to UV-B thiol-dependent ubiquitinyl hydrolase activity Spliceosome protein tyrosine phosphatase activity response to salt stress nuclear chromatin cell Golgi membrane cell redox homeostasis | details |
| TissueCFM001173 | transmembrane receptor protein tyrosine kinase activity peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII protein serine/threonine kinase activity ATP binding Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase integral component of membrane protein serine/threonine phosphatase activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001226 | regulation of protein phosphatase type 2A activity oligopeptide transport nuclear chromatin protein phosphatase type 2A complex mRNA surveillance pathway Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) integral component of membrane protein phosphatase type 2A regulator activity signal transduction | details |
| TissueCFM001400 | integral component of membrane response to UV-C inactivation of MAPK activity MAP kinase tyrosine/serine/threonine phosphatase activity phragmoplast spindle nuclear chromatin formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) oligopeptide transport response to UV-B peptidyl-tyrosine dephosphorylation plasma membrane cellulose biosynthetic process response to salt stress | details |
| TissueCFM001463 | Transcriptional misregulation in cancers oxalate catabolic process positive regulation of seed germination protein targeting glucose catabolic process seed coat development oxalate-CoA ligase activity 4-coumarate-CoA ligase activity defense response to fungus response to cytokinin cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001642 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication meiotic nuclear division response to nematode detection of light stimulus glucose catabolic process protein targeting mitotic spindle assembly growth cortical microtubule organization microtubule minus-end binding signaling receptor activity gamma-tubulin binding intracellular transport cellular protein modification process Transcriptional misregulation in cancers Lysosome equatorial microtubule organizing center gamma-tubulin complex structural constituent of cytoskeleton membrane coat nucleosome protein heterodimerization activity protein transport | details |
| TissueCFM001647 | Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |