TissueCFM001617's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Carbon metabolism | 0.002232853 | KEGG pathway |
| glucose-6-phosphate isomerase activity | 0.012141801 | GO:0004347 |
| animal organ development | 0.013018827 | GO:0048513 |
| gluconeogenesis | 0.013018827 | GO:0006094 |
| defense response to fungus, incompatible interaction | 0.013018827 | GO:0009817 |
| γ-glutamyl cycle | 0.023123864 | plantCyc |
| GDP-mannose biosynthesis | 0.026945971 | plantCyc |
| sucrose degradation III (sucrose invertase) | 0.026945971 | plantCyc |
| starch biosynthesis | 0.028816147 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.028816147 | plantCyc |
| sucrose biosynthesis II | 0.028816147 | plantCyc |
| calcium-dependent phospholipid binding | 0.030297152 | GO:0005544 |
| FMN binding | 0.03227117 | GO:0010181 |
| glycolytic process | 0.036012162 | GO:0006096 |
| gluconeogenesis I | 0.0380778 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.0380778 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001038 | AT5G14710 (1.00E-44) | |
| CRO_T006441 | AT5G28830 (9.00E-81) | calcium-binding EF hand family protein |
| CRO_T008344 | AT3G14415 (2.00E-177) | GOX2|glycolate oxidase 2 |
| CRO_T011915 | AT3G02910 (2.00E-55) | AIG2-like (avirulence induced gene) family protein |
| CRO_T016310 | AT1G48370 (0) | YSL8|YELLOW STRIPE like 8 |
| CRO_T018125 | AT1G74720 (0) | QKY|QUIRKY |
| CRO_T021496 | AT1G21740 (0.000007) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T024125 | AT5G01010 (4.00E-116) | |
| CRO_T030357 | AT5G42740 (0) | Sugar isomerase (SIS) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000539 | cellular respiration mitochondrial respiratory chain complex I cobalt ion binding Transcription_related, Transcription factor: ERF | details |
| TissueCFM000634 | translation preinitiation complex choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases N-acylphosphatidylethanolamine-specific phospholipase D activity phospholipase D activity phosphatidylcholine metabolic process eukaryotic translation initiation factor 3 complex extracellular space Lysosome carbohydrate transmembrane transport lipid catabolic process Glycerophospholipid metabolism cysteine-type endopeptidase activity RNA transport translational initiation proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000876 | alpha-Linolenic acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis calcium-dependent phospholipid binding Transcription_related, Transcription factor: bHLH response to abscisic acid methyltransferase activity | details |
| TissueCFM000967 | entrainment of circadian clock animal organ development cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase photoreceptor activity response to UV-B cell surface receptor signaling pathway chromatin calcium-dependent phospholipid binding Transcription_related, Transcription factor: NAC | details |
| TissueCFM001522 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding response to abscisic acid | details |
| TissueCFM001604 | Transcription_related, Transcription factor: G2-like animal organ development calcium-dependent phospholipid binding | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
| TissueCFM001681 | lutein biosynthesis Cytochrome_P450, Cytochrome P450: CYP97C zeinoxanthin epsilon hydroxylase activity carotenoid biosynthetic process Carotenoid biosynthesis Transcription_related, Transcription factor: bHLH metalloendopeptidase activity FMN binding | details |
| TissueCFM001684 | glucose-6-phosphate isomerase activity defense response to fungus, incompatible interaction gluconeogenesis Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: HB glycolytic process GDP-mannose biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) phosphatidylcholine acyl editing phospholipases starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) triacylglycerol degradation lipid metabolic process | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001778 | Carbon metabolism L-serine biosynthesis spermidine biosynthesis I spermine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthetic process spermine biosynthetic process S-adenosylmethioninamine biosynthetic process spermidine biosynthetic process Cysteine and methionine metabolism adenosylmethionine decarboxylase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity FMN binding protein serine/threonine phosphatase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation calmodulin binding | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
| TissueCFM001832 | γ-glutamyl cycle UDP-L-arabinose biosynthesis I (from UDP-xylose) kinase activity receptor serine/threonine kinase binding UDP-glucose 4-epimerase activity UDP-sugars interconversion simple leaf morphogenesis meristem development regulation of auxin mediated signaling pathway SCF ubiquitin ligase complex galactose metabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Amino sugar and nucleotide sugar metabolism 2-alkenal reductase [NAD(P)] activity ubiquitin-protein transferase activity | details |
| TissueCFM001837 | cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase animal organ development cell surface receptor signaling pathway plasma membrane calcium-dependent phospholipid binding | details |
Expression profiles
 Show details about module gene expression profiling |