TissueCFM001522's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| single organismal cell-cell adhesion | 0.004514645 | GO:0016337 |
| pectic galactan metabolic process | 0.004514645 | GO:0010401 |
| animal organ development | 0.005415972 | GO:0048513 |
| glycosaminoglycan biosynthetic process | 0.005415972 | GO:0006024 |
| heparan sulfate proteoglycan biosynthetic process | 0.005415972 | GO:0015012 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.005847174 | cazy family |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.007819149 | GO:0001888 |
| Transcription_related, Transcription factor: G2-like | 0.008761046 | TF family |
| phloem or xylem histogenesis | 0.012777323 | GO:0010087 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.013025176 | GO:0050508 |
| calcium-dependent phospholipid binding | 0.017354074 | GO:0005544 |
| response to abscisic acid | 0.042365852 | GO:0009737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002382 | AT1G14600 (7.00E-22) | Homeodomain-like superfamily protein |
| CRO_T010917 | AT4G37100 (6.00E-18) | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| CRO_T012349 | AT2G02061 (1.00E-102) | Nucleotide-diphospho-sugar transferase family protein |
| CRO_T018125 | AT1G74720 (0) | QKY|QUIRKY |
| CRO_T019749 | AT3G55830 (9.00E-59) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T030039 | AT1G07040 (1.00E-111) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000195 | pectic galactan metabolic process single organismal cell-cell adhesion heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc alkaloid metabolic process phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid | details |
| TissueCFM000196 | lipid catabolic process Cutin, suberine and wax biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc triacylglycerol degradation | details |
| TissueCFM000876 | alpha-Linolenic acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis calcium-dependent phospholipid binding Transcription_related, Transcription factor: bHLH response to abscisic acid methyltransferase activity | details |
| TissueCFM000967 | entrainment of circadian clock animal organ development cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase photoreceptor activity response to UV-B cell surface receptor signaling pathway chromatin calcium-dependent phospholipid binding Transcription_related, Transcription factor: NAC | details |
| TissueCFM001104 | glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity sphingomyelin phosphodiesterase D activity pectic galactan metabolic process single organismal cell-cell adhesion calcium ion transport formation of glycosidic bonds, GlycosylTransferases: GTnc heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity cation transmembrane transporter activity Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) cation transmembrane transport phloem or xylem histogenesis cellular transition metal ion homeostasis metal ion transport transition metal ion binding response to abscisic acid | details |
| TissueCFM001288 | phenylpropanoid biosynthesis, initial reactions Degradation of aromatic compounds Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity Transcription_related, Transcription regulator: LIM phenylalanine ammonia-lyase activity lignin metabolic process Protein export suberin monomers biosynthesis Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: MYB | details |
| TissueCFM001523 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM Transcription_related, Transcription factor: C2C2-Dof | details |
| TissueCFM001524 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM regulation of transcription, DNA-templated Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: G2-like DNA binding | details |
| TissueCFM001604 | Transcription_related, Transcription factor: G2-like animal organ development calcium-dependent phospholipid binding | details |
| TissueCFM001617 | Carbon metabolism glucose-6-phosphate isomerase activity animal organ development gluconeogenesis defense response to fungus, incompatible interaction γ-glutamyl cycle GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II calcium-dependent phospholipid binding FMN binding glycolytic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) | details |
| TissueCFM001695 | endosome trans-Golgi network cytokinin-O-glucosides biosynthesis Other types of O-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc pectic galactan metabolic process single organismal cell-cell adhesion simple leaf morphogenesis sphingomyelin phosphodiesterase D activity glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity UDP-glycosyltransferase activity glycosaminoglycan biosynthetic process regulation of auxin mediated signaling pathway heparan sulfate proteoglycan biosynthetic process Zeatin biosynthesis cell morphogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation SCF ubiquitin ligase complex phloem or xylem histogenesis | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
| TissueCFM001837 | cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase animal organ development cell surface receptor signaling pathway plasma membrane calcium-dependent phospholipid binding | details |
Expression profiles
 Show details about module gene expression profiling |