TissueCFM001633's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.005984652 | kinase family |
| intrinsic component of membrane | 0.009445018 | GO:0031224 |
| regulation of meristem structural organization | 0.01211569 | GO:0009934 |
| glycerophospholipid metabolic process | 0.01211569 | GO:0006650 |
| Base excision repair | 0.014865034 | KEGG pathway |
| Glycerophospholipid metabolism | 0.01729342 | KEGG pathway |
| diacylglycerol and triacylglycerol biosynthesis | 0.018129766 | plantCyc |
| phosphatidylcholine acyl editing | 0.018129766 | plantCyc |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.018129766 | plantCyc |
| protein kinase binding | 0.038471795 | GO:0019901 |
| DNA N-glycosylase activity | 0.038471795 | GO:0019104 |
| O-acyltransferase activity | 0.038471795 | GO:0008374 |
| base-excision repair | 0.040328385 | GO:0006284 |
| plasma membrane | 0.044188911 | GO:0005886 |
| calmodulin-dependent protein kinase activity | 0.046104804 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.046104804 | GO:0009931 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004367 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
| CRO_T008923 | AT1G21870 (3.00E-26) | GONST5|golgi nucleotide sugar transporter 5 |
| CRO_T017289 | AT3G14000 (6.00E-14) | ATBRXL2; BRX-LIKE2|DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein |
| CRO_T018877 | AT4G31750 (1.00E-18) | WIN2|HOPW1-1-interacting 2 |
| CRO_T031345 | AT1G78690 (2.00E-96) | At1g78690p|Phospholipid/glycerol acyltransferase family protein |
| CRO_T031529 | AT1G75230 (4.00E-91) | DNA glycosylase superfamily protein |
| CRO_T032707 | AT3G10150 (5.00E-136) | PAP16|purple acid phosphatase 16 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000630 | cellulose biosynthesis cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization mRNA surveillance pathway carbohydrate homeostasis negative regulation of protein kinase activity sulfate transport cellular response to sucrose stimulus embryonic root morphogenesis protein dephosphorylation L-arabinose metabolic process plant-type primary cell wall biogenesis calcium ion transport osmosensory signaling pathway | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001306 | cell wall organization or biogenesis O-acetyltransferase activity calcium ion binding | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
| TissueCFM001480 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV L-tryptophan biosynthesis GMP synthase activity GMP synthase (glutamine-hydrolyzing) activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase GMP biosynthetic process ATP binding calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation carbohydrate transport | details |
| TissueCFM001605 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium-dependent protein serine/threonine kinase activity ATP binding calmodulin-dependent protein kinase activity protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001682 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family gluconeogenesis I malate dehydrogenase (decarboxylating) (NAD+) activity carbohydrate transport malate metabolic process cobalt ion binding Carbon metabolism | details |
| TissueCFM001732 | Transcription_related, Transcription factor: CAMTA Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity abscisic acid-activated signaling pathway protein autophosphorylation peptidyl-serine phosphorylation calcium-dependent protein serine/threonine kinase activity protein phosphatase type 2A regulator activity calmodulin-dependent protein kinase activity intracellular signal transduction | details |
| TissueCFM001800 | DNA N-glycosylase activity base-excision repair Base excision repair | details |
Expression profiles
 Show details about module gene expression profiling |