TissueCFM001669's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellulose biosynthesis | 0.006107988 | plantCyc |
| xyloglucan biosynthesis | 0.006107988 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.016216968 | cazy family |
| Transcription_related, Transcription factor: LOB | 0.016216968 | TF family |
| Transcription_related, Transcription factor: RWP-RK | 0.016216968 | TF family |
| Transcription_related, Transcription factor: bHLH | 0.029748293 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008559 | AT2G15320 (1.00E-19) | Leucine-rich repeat (LRR) family protein |
| CRO_T009062 | AT1G76350 (1.00E-19) | NLP5|NIN-like protein 5 |
| CRO_T011480 | AT5G46330 (6.00E-59) | FLS2|FLAGELLIN-SENSITIVE 2 |
| CRO_T020542 | AT5G22740 (4.00E-71) | ATCSLA02| CELLULOSE SYNTHASE-LIKE A02; ATCSLA2| CELLULOSE SYNTHASE-LIKE A2; CSLA02|cellulose synthase-like A02; CSLA2|CELLULOSE SYNTHASE-LIKE A 2 |
| CRO_T026279 | AT2G02590 (2.00E-74) | unknown protein |
| CRO_T029900 | AT5G66870 (2.00E-57) | ASL1|ASYMMETRIC LEAVES 2-like 1; LBD36|LATERAL ORGAN BOUNDARIES DOMAIN GENE 36 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000251 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000354 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000365 | seleno-amino acid biosynthesis protein depalmitoylation 'de novo' L-methionine biosynthetic process L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity cystathionine beta-lyase activity palmitoyl-(protein) hydrolase activity Transcription_related, Transcription factor: C3H carboxylic ester hydrolase activity Base excision repair Glycerophospholipid metabolism Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000403 | Transcription_related, Transcription factor: AP2 low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000544 | intracellular part | details |
| TissueCFM000712 | cytoplasmic, membrane-bounded vesicle 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000777 | formation of glycosidic bonds, GlycosylTransferases: GTnc seleno-amino acid biosynthesis Various types of N-glycan biosynthesis cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) fucosyltransferase activity L-cysteine desulfhydrase activity cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process protein depalmitoylation fucosylation palmitoyl-(protein) hydrolase activity Golgi cisterna membrane biological regulation carboxylic ester hydrolase activity protein glycosylation Glycerophospholipid metabolism cell part Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity protein binding | details |
| TissueCFM000883 | detoxification of nitrogen compound cyanide catabolic process meiosis I 3-cyanoalanine hydratase activity cyanoalanine nitrilase activity cyanide detoxification I L-asparagine degradation I Meiosis - yeast pyruvate decarboxylation to acetyl CoA superpathway of aspartate and asparagine biosynthesis chromosome organization Cyanoamino acid metabolism Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: RWP-RK DNA metabolic process | details |
| TissueCFM000946 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001086 | ABC transporters auxin influx transmembrane transporter activity taurine-transporting ATPase activity root hair elongation gravitropism amine transport basipetal auxin transport auxin efflux auxin influx xenobiotic transport auxin efflux transmembrane transporter activity xenobiotic-transporting ATPase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001128 | Golgi apparatus part bounding membrane of organelle intracellular transport Golgi vesicle transport membrane coat Ubiquitin_Proteasome_system, E3 adaptor: DWD protein transport | details |
| TissueCFM001230 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001441 | benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: NAC oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor MAPK signaling pathway - plant Plant hormone signal transduction | details |
| TissueCFM001449 | phosphatidylethanolamine biosynthesis I FoxO signaling pathway Protein digestion and absorption Ubiquitin_Proteasome_system, DUB: ULP Ubiquitin_Proteasome_system, DUB: USP Ubiquitin_Proteasome_system, E3: HECT very long chain fatty acid biosynthesis I Glycerophospholipid metabolism | details |
| TissueCFM001534 | transmembrane receptor protein serine/threonine kinase binding salicylate glucosides biosynthesis II cellulose biosynthesis xyloglucan biosynthesis quercetin glucoside biosynthesis (Allium) organic phosphonate transport organophosphate ester transport recognition of pollen quercetin gentiotetraside biosynthesis organic phosphonate transmembrane-transporting ATPase activity | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
| TissueCFM001760 | nucleotide phosphorylation adenylate kinase activity pyruvate decarboxylation to acetyl CoA adenosine ribonucleotides de novo biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |