TissueCFM000403's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: AP2 | 0.012336094 | TF family |
| low-affinity nitrate transmembrane transporter activity | 0.013777966 | GO:0080054 |
| low-affinity nitrate transport | 0.018875813 | GO:0080055 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001571 | - | - |
| CRO_T003889 | AT1G52190 (9.00E-149) | NPF1.2|NRT1/ PTR family 1.2; NRT1.11|nitrate transporter 1.11 |
| CRO_T004585 | AT5G65510 (6.00E-78) | AIL7|AINTEGUMENTA-like 7; PLT7|PLETHORA 7 |
| CRO_T005164 | - | - |
| CRO_T005377 | - | - |
| CRO_T007879 | - | - |
| CRO_T008559 | AT2G15320 (1.00E-19) | Leucine-rich repeat (LRR) family protein |
| CRO_T008656 | - | - |
| CRO_T011279 | - | - |
| CRO_T011322 | - | - |
| CRO_T013283 | - | - |
| CRO_T016171 | - | - |
| CRO_T016555 | - | - |
| CRO_T019118 | - | - |
| CRO_T020069 | - | - |
| CRO_T023042 | - | - |
| CRO_T023743 | - | - |
| CRO_T024598 | - | - |
| CRO_T025236 | - | - |
| CRO_T025908 | - | - |
| CRO_T025970 | AT2G32080 (4.00E-07) | PUR ALPHA-1|purin-rich alpha 1 |
| CRO_T027536 | - | - |
| CRO_T029112 | - | - |
| CRO_T029757 | AT1G43760 (0.000000001) | DNAse I-like superfamily protein |
| CRO_T030300 | - | - |
| CRO_T030949 | AT4G30380 (8.00E-12) | Barwin-related endoglucanase |
| CRO_T032166 | - | - |
| CRO_T032336 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000074 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000251 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000330 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000354 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000365 | seleno-amino acid biosynthesis protein depalmitoylation 'de novo' L-methionine biosynthetic process L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity cystathionine beta-lyase activity palmitoyl-(protein) hydrolase activity Transcription_related, Transcription factor: C3H carboxylic ester hydrolase activity Base excision repair Glycerophospholipid metabolism Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000431 | Photosynthesis phosphate ion binding low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000462 | Transcription_related, Transcription factor: AP2 metabolic process ent-kaurene biosynthesis I Transcription_related, Transcription factor: PLATZ Diterpenoid biosynthesis single-organism process | details |
| TissueCFM000463 | Transcription_related, Transcription factor: AP2 metabolic process ATP synthesis coupled electron transport single-organism process transferase activity, transferring hexosyl groups | details |
| TissueCFM000544 | intracellular part | details |
| TissueCFM000712 | cytoplasmic, membrane-bounded vesicle 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000713 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity | details |
| TissueCFM000777 | formation of glycosidic bonds, GlycosylTransferases: GTnc seleno-amino acid biosynthesis Various types of N-glycan biosynthesis cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) fucosyltransferase activity L-cysteine desulfhydrase activity cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process protein depalmitoylation fucosylation palmitoyl-(protein) hydrolase activity Golgi cisterna membrane biological regulation carboxylic ester hydrolase activity protein glycosylation Glycerophospholipid metabolism cell part Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity protein binding | details |
| TissueCFM000946 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001019 | phospholipid transport nucleotide binding | details |
| TissueCFM001032 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001052 | low-affinity nitrate transmembrane transporter activity phosphate ion binding Fc gamma R-mediated phagocytosis low-affinity nitrate transport protein stabilization oligopeptide transport Transcription_related, Transcription factor: ERF Photosynthesis photosystem II | details |
| TissueCFM001086 | ABC transporters auxin influx transmembrane transporter activity taurine-transporting ATPase activity root hair elongation gravitropism amine transport basipetal auxin transport auxin efflux auxin influx xenobiotic transport auxin efflux transmembrane transporter activity xenobiotic-transporting ATPase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001108 | 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Peroxisome | details |
| TissueCFM001111 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity oligopeptide transport ATP-dependent helicase activity poly(A) RNA binding RNA processing spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
| TissueCFM001128 | Golgi apparatus part bounding membrane of organelle intracellular transport Golgi vesicle transport membrane coat Ubiquitin_Proteasome_system, E3 adaptor: DWD protein transport | details |
| TissueCFM001153 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001230 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001330 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity meristem structural organization phospholipid biosynthetic process Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family oligopeptide transport Glycerophospholipid metabolism carboxy-lyase activity nucleotide binding Transcription_related, Transcription factor: B3 protein autophosphorylation | details |
| TissueCFM001441 | benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: NAC oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor MAPK signaling pathway - plant Plant hormone signal transduction | details |
| TissueCFM001449 | phosphatidylethanolamine biosynthesis I FoxO signaling pathway Protein digestion and absorption Ubiquitin_Proteasome_system, DUB: ULP Ubiquitin_Proteasome_system, DUB: USP Ubiquitin_Proteasome_system, E3: HECT very long chain fatty acid biosynthesis I Glycerophospholipid metabolism | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
| TissueCFM001669 | cellulose biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: LOB Transcription_related, Transcription factor: RWP-RK Transcription_related, Transcription factor: bHLH | details |
Expression profiles
 Show details about module gene expression profiling |