TissueCFM001689's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| SCF complex assembly | 0.005782675 | GO:0010265 |
| N-terminal peptidyl-methionine acetylation | 0.005782675 | GO:0017196 |
| Transcription_related, Transcription factor: M-type | 0.011120806 | TF family |
| xylem and phloem pattern formation | 0.011560223 | GO:0010051 |
| peptide alpha-N-acetyltransferase activity | 0.017533747 | GO:0004596 |
| amino acid binding | 0.0194503 | GO:0016597 |
| vegetative to reproductive phase transition of meristem | 0.020780745 | GO:0010228 |
| ribosomal large subunit assembly | 0.020780745 | GO:0000027 |
| response to auxin | 0.032014605 | GO:0009733 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002195 | AT2G02560 (0) | ATCAND1|CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1; CAND1|cullin-associated and neddylation dissociated; HVE|HEMIVENATA |
| CRO_T007503 | AT5G04740 (7.00E-55) | ACR12|ACT domain repeats 12 |
| CRO_T007678 | AT1G80410 (0) | EMB2753|EMBRYO DEFECTIVE 2753; OMA|OMISHA |
| CRO_T013844 | AT4G14368 (0.0005) | Regulator of chromosome condensation (RCC1) family protein |
| CRO_T016287 | - | - |
| CRO_T025813 | AT3G15460 (4.00E-83) | Ribosomal RNA processing Brix domain protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000827 | regulation of alternative mRNA splicing, via spliceosome protein refolding Fanconi anemia pathway seed germination RNA degradation microtubule-based movement DNA repair | details |
| TissueCFM001131 | Aminoacyl-tRNA biosynthesis N-terminal peptidyl-methionine acetylation leucyl-tRNA aminoacylation phenylalanyl-tRNA aminoacylation regulation of translational fidelity DNA topological change phenylalanine-tRNA ligase complex Transcription_related, Transcription factor: M-type hydrolase activity, acting on acid anhydrides phenylalanine-tRNA ligase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity leucine-tRNA ligase activity aminoacyl-tRNA editing activity peptide alpha-N-acetyltransferase activity | details |
| TissueCFM001409 | nucleolus photorespiration positive regulation of transport protein binding involved in protein folding megagametogenesis cytosol phosphatase activity ribosomal large subunit assembly rRNA processing Ubiquitin_Proteasome_system, E3 adaptor: DWD unfolded protein binding dephosphorylation Ribosome biogenesis in eukaryotes protein folding | details |
| TissueCFM001468 | regulation of alternative mRNA splicing, via spliceosome nucleic acid binding nucleotide binding seed germination Transcription_related, Transcription regulator: mTERF amino acid binding Transcription_related, Transcription factor: ERF cytoplasmic mRNA processing body | details |
| TissueCFM001490 | Ubiquitin_Proteasome_system, DUB: JAMM protein-L-isoaspartate (D-aspartate) O-methyltransferase activity cytosol N-terminal peptidyl-methionine acetylation aging SCF complex assembly protein methylation xylem and phloem pattern formation peptide alpha-N-acetyltransferase activity amino acid binding seed germination vegetative to reproductive phase transition of meristem formation of translation preinitiation complex RNA transport translation initiation factor activity response to auxin response to salt stress | details |
| TissueCFM001656 | Transcription_related, Transcription regulator: mTERF negative regulation of microtubule depolymerization microtubule plus-end binding cortical microtubule organization protein stabilization mitotic nuclear division cell growth cell cortex spindle microtubule ribosome biogenesis RNA secondary structure unwinding phragmoplast | details |
Expression profiles
 Show details about module gene expression profiling |