TissueCFM001712's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ribosomal large subunit assembly | 0.000214941 | GO:0000027 |
| phospholipid desaturation | 0.001417916 | plantCyc |
| nucleolus | 0.002081287 | GO:0005730 |
| rRNA primary transcript binding | 0.007817416 | GO:0042134 |
| RNA binding | 0.007817416 | GO:0003723 |
| maturation of 5.8S rRNA | 0.01348892 | GO:0000460 |
| Ribosome biogenesis in eukaryotes | 0.014979899 | KEGG pathway |
| chloroplast inner membrane | 0.016841199 | GO:0009706 |
| preribosome, large subunit precursor | 0.016841199 | GO:0030687 |
| tRNA processing | 0.017328807 | GO:0008033 |
| maturation of LSU-rRNA | 0.017328807 | GO:0000470 |
| rRNA processing | 0.031523324 | GO:0006364 |
| ubiquitin protein ligase binding | 0.032064737 | GO:0031625 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003187 | AT4G27030 (2.00E-107) | FAD4|FATTY ACID DESATURASE 4; FADA|fatty acid desaturase A |
| CRO_T009979 | AT3G60590 (1.00E-74) | unknown protein |
| CRO_T015561 | AT5G52490 (1.00E-61) | Fibrillarin family protein |
| CRO_T017044 | AT4G01560 (2.00E-124) | MEE49|maternal effect embryo arrest 49 |
| CRO_T026746 | AT3G15460 (2.00E-112) | Ribosomal RNA processing Brix domain protein |
| CRO_T028013 | AT5G14940 (9.00E-160) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000482 | Meiosis - yeast positive regulation of autophagy DNA catabolic process, endonucleolytic RNA biosynthetic process hexose transmembrane transport DNA topological change glucose import DNA topoisomerase complex (ATP-hydrolyzing) chloroplast inner membrane chromosome DNA topoisomerase type II (ATP-hydrolyzing) activity DNA-directed RNA polymerase activity identical protein binding sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM000813 | Ribosome 5S rRNA binding rRNA primary transcript binding gene expression cellular nitrogen compound metabolic process response to high light intensity regulation of signal transduction maturation of 5.8S rRNA response to hydrogen peroxide maturation of LSU-rRNA cellular macromolecule metabolic process response to heat ribosomal large subunit assembly primary metabolic process preribosome, large subunit precursor | details |
| TissueCFM001333 | nuclear cap binding complex long-day photoperiodism, flowering mRNA transport RNA splicing, via endonucleolytic cleavage and ligation primary miRNA processing mRNA cis splicing, via spliceosome RNA cap binding transcription from RNA polymerase III promoter Transcription_related, Transcription factor: HB tRNA processing DNA-directed RNA polymerase III complex iron-sulfur cluster assembly DNA binding iron-sulfur cluster binding RNA polymerase III activity chloroplast organization rRNA processing response to abscisic acid | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001686 | phospholipid desaturation Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase Transcription_related, Transcription regulator: SET Oxidative phosphorylation | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
| TissueCFM001774 | preribosome, large subunit precursor nucleolus Transcription_related, Transcription factor: BBR-BPC Cellular senescence U2-type prespliceosome U2 snRNP spliceosomal complex assembly cytoplasmic translation response to ethylene ribosomal large subunit assembly maturation of LSU-rRNA ribosome biogenesis maturation of 5.8S rRNA large ribosomal subunit rRNA binding rRNA primary transcript binding catalytic step 2 spliceosome cytosolic large ribosomal subunit | details |
Expression profiles
 Show details about module gene expression profiling |