TissueCFM001774's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| preribosome, large subunit precursor | 0.000154291 | GO:0030687 |
| nucleolus | 0.001654396 | GO:0005730 |
| Transcription_related, Transcription factor: BBR-BPC | 0.003190782 | TF family |
| Cellular senescence | 0.010720611 | KEGG pathway |
| U2-type prespliceosome | 0.010721403 | GO:0071004 |
| U2 snRNP | 0.013662721 | GO:0005686 |
| spliceosomal complex assembly | 0.014222066 | GO:0000245 |
| cytoplasmic translation | 0.014222066 | GO:0002181 |
| response to ethylene | 0.014222066 | GO:0009723 |
| ribosomal large subunit assembly | 0.014222066 | GO:0000027 |
| maturation of LSU-rRNA | 0.014222066 | GO:0000470 |
| ribosome biogenesis | 0.014222066 | GO:0042254 |
| maturation of 5.8S rRNA | 0.014222066 | GO:0000460 |
| large ribosomal subunit rRNA binding | 0.014326635 | GO:0070180 |
| rRNA primary transcript binding | 0.014326635 | GO:0042134 |
| catalytic step 2 spliceosome | 0.02055166 | GO:0071013 |
| cytosolic large ribosomal subunit | 0.045314194 | GO:0022625 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002857 | AT2G40010 (1.00E-125) | Ribosomal protein L10 family protein |
| CRO_T008136 | AT1G47271 (2.00E-46) | Cystathionine beta-synthase (CBS) family protein |
| CRO_T013846 | AT1G14685 (8.00E-37) | ATBPC2|BASIC PENTACYSTEINE 2 |
| CRO_T017044 | AT4G01560 (2.00E-124) | MEE49|maternal effect embryo arrest 49 |
| CRO_T023356 | AT2G32600 (7.00E-88) | hydroxyproline-rich glycoprotein family protein |
| CRO_T032251 | AT5G67320 (5.00E-12) | HOS15|high expression of osmotically responsive genes 15 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000724 | L-histidine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase L-glutamate import response to high light intensity L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport cellular nitrogen compound metabolic process histidine biosynthetic process gene expression response to hydrogen peroxide regulation of signal transduction L-glutamate transmembrane transporter activity histidinol-phosphate transaminase activity L-lysine transmembrane transporter activity cellular macromolecule metabolic process cation binding L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TissueCFM000813 | Ribosome 5S rRNA binding rRNA primary transcript binding gene expression cellular nitrogen compound metabolic process response to high light intensity regulation of signal transduction maturation of 5.8S rRNA response to hydrogen peroxide maturation of LSU-rRNA cellular macromolecule metabolic process response to heat ribosomal large subunit assembly primary metabolic process preribosome, large subunit precursor | details |
| TissueCFM001087 | nucleic acid binding amino acid homeostasis amino acid export amino acid import lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of 5.8S rRNA spliceosomal complex assembly maturation of LSU-rRNA amino acid transmembrane transport amino acid transmembrane transporter activity Aminoacyl-tRNA biosynthesis catalytic step 2 spliceosome preribosome, large subunit precursor U2-type prespliceosome U2 snRNP | details |
| TissueCFM001341 | nuclear-transcribed mRNA catabolic process, non-stop decay nuclear-transcribed mRNA catabolic process, no-go decay RNA surveillance magnesium ion transmembrane transport spliceosomal complex assembly magnesium ion transport U2 snRNP U2-type prespliceosome magnesium ion transmembrane transporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis catalytic step 2 spliceosome mRNA surveillance pathway Spliceosome | details |
| TissueCFM001653 | Biosynthesis of amino acids L-histidine biosynthesis histidinol-phosphate transaminase activity argininosuccinate synthase activity response to high light intensity argininosuccinate metabolic process response to hydrogen peroxide histidine biosynthetic process urea cycle L-phenylalanine:2-oxoglutarate aminotransferase activity arginine biosynthetic process response to heat chloroplast precatalytic spliceosome response to salt stress | details |
| TissueCFM001702 | adenosine ribonucleotides de novo biosynthesis regulation of translation lysyl-tRNA aminoacylation lysine-tRNA ligase activity nucleic acid binding spliceosomal complex assembly response to cold mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport response to heat U2 snRNP U2-type prespliceosome pollen tube ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism catalytic step 2 spliceosome | details |
| TissueCFM001712 | ribosomal large subunit assembly phospholipid desaturation nucleolus rRNA primary transcript binding RNA binding maturation of 5.8S rRNA Ribosome biogenesis in eukaryotes chloroplast inner membrane preribosome, large subunit precursor tRNA processing maturation of LSU-rRNA rRNA processing ubiquitin protein ligase binding | details |
Expression profiles
 Show details about module gene expression profiling |