TissueCFM001772's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Vitamin B6 metabolism | 0.005316398 | KEGG pathway |
| L-asparagine degradation I | 0.005849767 | plantCyc |
| structural constituent of cell wall | 0.005889396 | GO:0005199 |
| phosphoethanolamine phosphatase activity | 0.005889396 | GO:0052732 |
| phosphocholine phosphatase activity | 0.005889396 | GO:0052731 |
| asparaginase activity | 0.005889396 | GO:0004067 |
| photorespiration | 0.006817168 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 0.006817168 | plantCyc |
| pyrimidine nucleobase metabolic process | 0.008093936 | GO:0006206 |
| pyrimidine nucleoside salvage | 0.008093936 | GO:0043097 |
| uridine kinase activity | 0.010596998 | GO:0004849 |
| Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase | 0.023617964 | kinase family |
| chloroplast part | 0.024811185 | GO:0044434 |
| cytosol | 0.024811185 | GO:0005829 |
| Transcription_related, Transcription factor: C2H2 | 0.038203804 | TF family |
| Transcription_related, Transcription factor: HB | 0.038203804 | TF family |
| lipid binding | 0.042085895 | GO:0008289 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003230 | AT1G03840 (7.00E-78) | MGP|Magpie |
| CRO_T007718 | AT1G80380 (1.00E-38) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T009278 | AT5G38560 (0) | AtPERK8|proline-rich extensin-like receptor kinase 8 |
| CRO_T016724 | AT1G05230 (0) | HDG2|homeodomain GLABROUS 2 |
| CRO_T017989 | AT5G08100 (1.00E-108) | ASPGA1|asparaginase A1 |
| CRO_T032655 | AT1G73010 (2.00E-79) | AtPPsPase1|pyrophosphate-specific phosphatase1; ATPS2|phosphate starvation-induced gene 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001356 | alpha-1,2-mannosyltransferase activity protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC Glycosaminoglycan degradation mannosylation N-Glycan biosynthesis ER-associated ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: HB lipid binding | details |
| TissueCFM001380 | Transcription_related, Transcription factor: BBR-BPC response to oxidative stress glutathione-peroxide redox reactions reactive oxygen species degradation L-valine degradation I methylmalonate-semialdehyde dehydrogenase (acylating) activity glutathione peroxidase activity malonate-semialdehyde dehydrogenase (acetylating) activity regulation of mitotic cell cycle Arachidonic acid metabolism regulation of cyclin-dependent protein serine/threonine kinase activity aldehyde dehydrogenase (NAD) activity Transcription_related, Transcription factor: HB Glutathione metabolism glutathione transferase activity lipid binding | details |
| TissueCFM001406 | photosystem I assembly mRNA cis splicing, via spliceosome Group II intron splicing L-asparagine degradation I asparaginase activity superpathway of aspartate and asparagine biosynthesis actin binding endonuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001533 | secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: zf-HD L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity polyamine transmembrane transport DNA binding transferase activity, transferring hexosyl groups lipid binding antiporter activity amino acid transmembrane transport Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TissueCFM001587 | asparaginase activity L-asparagine degradation I superpathway of aspartate and asparagine biosynthesis actin binding Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001588 | phosphocholine phosphatase activity phosphoethanolamine phosphatase activity UDP-glucuronate decarboxylase activity asparaginase activity Vitamin B6 metabolism L-asparagine degradation I superpathway of aspartate and asparagine biosynthesis UDP-D-xylose biosynthesis Transcription_related, Transcription factor: C2C2-Dof dephosphorylation actin binding Transcription_related, Transcription factor: C2H2 Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM001650 | phosphocholine phosphatase activity phosphoethanolamine phosphatase activity Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase Vitamin B6 metabolism Transcription_related, Transcription factor: TCP Transcription_related, Transcription factor: Trihelix NF-kappa B signaling pathway dephosphorylation | details |
| TissueCFM001664 | Other types of O-glycan biosynthesis Phagosome formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: zf-HD D-myo-inositol (1,4,5)-trisphosphate degradation cAMP-dependent protein kinase activity tubulin complex cellular response to gravity glycolysis I (from glucose 6-phosphate) response to cadmium ion phosphatidylinositol dephosphorylation microtubule-based process cell surface receptor signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |