TissueCFM001087's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleic acid binding | 0.000506599 | GO:0003676 |
| amino acid homeostasis | 0.004496971 | GO:0080144 |
| amino acid export | 0.004496971 | GO:0032973 |
| amino acid import | 0.004496971 | GO:0043090 |
| lysyl-tRNA aminoacylation | 0.004496971 | GO:0006430 |
| lysine-tRNA ligase activity | 0.006080662 | GO:0004824 |
| maturation of 5.8S rRNA | 0.006294085 | GO:0000460 |
| spliceosomal complex assembly | 0.008985972 | GO:0000245 |
| maturation of LSU-rRNA | 0.008985972 | GO:0000470 |
| amino acid transmembrane transport | 0.024087796 | GO:0003333 |
| amino acid transmembrane transporter activity | 0.035373177 | GO:0015171 |
| Aminoacyl-tRNA biosynthesis | 0.039499805 | KEGG pathway |
| catalytic step 2 spliceosome | 0.048342609 | GO:0071013 |
| preribosome, large subunit precursor | 0.048342609 | GO:0030687 |
| U2-type prespliceosome | 0.048342609 | GO:0071004 |
| U2 snRNP | 0.048342609 | GO:0005686 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004460 | AT1G23280 (3.00E-67) | MAK16 protein-related |
| CRO_T005894 | AT1G47960 (5.00E-21) | ATC/VIF1|CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1 |
| CRO_T011453 | AT4G24015 (4.00E-26) | RING/U-box superfamily protein |
| CRO_T015787 | AT3G11710 (8.00E-180) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T022449 | AT1G21890 (8.00E-124) | UMAMIT19|Usually multiple acids move in and out Transporters 19 |
| CRO_T023356 | AT2G32600 (7.00E-88) | hydroxyproline-rich glycoprotein family protein |
| CRO_T028545 | AT4G02040 (1.00E-10) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000108 | lysyl-tRNA aminoacylation plasmodesma lysine-tRNA ligase activity single-organism metabolic process phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) cytosol Peroxisome Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000416 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum lysyl-tRNA aminoacylation sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity lysine-tRNA ligase activity phosphorelay sensor kinase activity phosphorelay signal transduction system signal transduction by protein phosphorylation | details |
| TissueCFM000489 | lysyl-tRNA aminoacylation flavin-containing compound metabolic process FAD diphosphatase activity lysine-tRNA ligase activity Transcription_related, Transcription factor: FAR1 nucleic acid binding phosphatase activity | details |
| TissueCFM001177 | lysyl-tRNA aminoacylation Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis molybdopterin synthase complex lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis RNA transport | details |
| TissueCFM001341 | nuclear-transcribed mRNA catabolic process, non-stop decay nuclear-transcribed mRNA catabolic process, no-go decay RNA surveillance magnesium ion transmembrane transport spliceosomal complex assembly magnesium ion transport U2 snRNP U2-type prespliceosome magnesium ion transmembrane transporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis catalytic step 2 spliceosome mRNA surveillance pathway Spliceosome | details |
| TissueCFM001526 | CA1P biosynthesis TNF signaling pathway lysyl-tRNA aminoacylation lysine-tRNA ligase activity phosphoglycerate mutase activity plant sterol biosynthesis Transcription_related, Transcription factor: G2-like cytosol phosphatase activity Aminoacyl-tRNA biosynthesis protein folding dephosphorylation | details |
| TissueCFM001527 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) CA1P biosynthesis fatty acid α-oxidation I TNF signaling pathway lysyl-tRNA aminoacylation 3-chloroallyl aldehyde dehydrogenase activity lysine-tRNA ligase activity phosphoglycerate mutase activity aldehyde dehydrogenase (NAD) activity phosphatase activity Glycolysis / Gluconeogenesis cytosol Aminoacyl-tRNA biosynthesis single-organism metabolic process dephosphorylation protein folding unfolded protein binding | details |
| TissueCFM001670 | regulation of ruffle assembly lysyl-tRNA aminoacylation sphingolipid biosynthesis (plants) ruffle membrane Sphingolipid metabolism Transcription_related, Transcription factor: C2H2 Aminoacyl-tRNA biosynthesis lysine-tRNA ligase activity nucleic acid binding fatty acid biosynthetic process phosphatidylinositol binding | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001702 | adenosine ribonucleotides de novo biosynthesis regulation of translation lysyl-tRNA aminoacylation lysine-tRNA ligase activity nucleic acid binding spliceosomal complex assembly response to cold mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport response to heat U2 snRNP U2-type prespliceosome pollen tube ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism catalytic step 2 spliceosome | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
| TissueCFM001774 | preribosome, large subunit precursor nucleolus Transcription_related, Transcription factor: BBR-BPC Cellular senescence U2-type prespliceosome U2 snRNP spliceosomal complex assembly cytoplasmic translation response to ethylene ribosomal large subunit assembly maturation of LSU-rRNA ribosome biogenesis maturation of 5.8S rRNA large ribosomal subunit rRNA binding rRNA primary transcript binding catalytic step 2 spliceosome cytosolic large ribosomal subunit | details |
Expression profiles
 Show details about module gene expression profiling |