TissueCFM001779's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.003189368 | plantCyc |
| fatty acid α-oxidation I | 0.003189368 | plantCyc |
| aldehyde dehydrogenase [NAD(P)+] activity | 0.003693308 | GO:0004030 |
| 3-chloroallyl aldehyde dehydrogenase activity | 0.003693308 | GO:0004028 |
| cellular aldehyde metabolic process | 0.006071349 | GO:0006081 |
| regulation of mitotic cell cycle | 0.006071349 | GO:0007346 |
| regulation of cyclin-dependent protein serine/threonine kinase activity | 0.00674395 | GO:0000079 |
| carbohydrate transmembrane transport | 0.007584141 | GO:0034219 |
| aldehyde dehydrogenase (NAD) activity | 0.008364078 | GO:0004029 |
| Glycolysis / Gluconeogenesis | 0.016455283 | KEGG pathway |
| Endocytosis | 0.026405845 | KEGG pathway |
| transporter activity | 0.043581796 | GO:0005215 |
| endomembrane system | 0.046007166 | GO:0012505 |
| plastid | 0.046007166 | GO:0009536 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008511 | AT5G46110 (1.00E-146) | APE2|ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2; TPT|triose-phosphate ⁄ phosphate translocator |
| CRO_T010730 | AT1G44170 (1.00E-65) | ALDH3H1|aldehyde dehydrogenase 3H1; ALDH4|aldehyde dehydrogenase 4 |
| CRO_T014280 | AT5G06830 (0) | unknown protein |
| CRO_T017633 | AT3G46540 (1.00E-66) | ENTH/VHS family protein |
| CRO_T018525 | AT4G31530 (3.00E-12) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T024103 | AT1G21670 (0) | LOCATED IN: cell wall, plant-type cell wall |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000661 | Plant-pathogen interaction response to symbiont nodulation regulation of nitrogen utilization regulation of phosphorylation regulation of fatty acid biosynthetic process | details |
| TissueCFM001011 | Transcription_related, Transcription factor: NF-YA response to symbiont nodulation geraniol and geranial biosynthesis mannitol degradation II Phenylpropanoid biosynthesis Antigen processing and presentation protein autophosphorylation peptidyl-serine phosphorylation Plant-pathogen interaction calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor intracellular signal transduction | details |
| TissueCFM001354 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription regulator: SWI/SNF-BAF60b replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex strand invasion regulation of cyclin-dependent protein serine/threonine kinase activity mitotic recombination regulation of mitotic cell cycle reciprocal meiotic recombination response to ionizing radiation meiotic DNA recombinase assembly Homologous recombination cellular water homeostasis water transport glycerol transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding water channel activity DNA-dependent ATPase activity glycerol channel activity single-stranded DNA binding double-stranded DNA binding ion transmembrane transport translational initiation translation initiation factor activity | details |
| TissueCFM001380 | Transcription_related, Transcription factor: BBR-BPC response to oxidative stress glutathione-peroxide redox reactions reactive oxygen species degradation L-valine degradation I methylmalonate-semialdehyde dehydrogenase (acylating) activity glutathione peroxidase activity malonate-semialdehyde dehydrogenase (acetylating) activity regulation of mitotic cell cycle Arachidonic acid metabolism regulation of cyclin-dependent protein serine/threonine kinase activity aldehyde dehydrogenase (NAD) activity Transcription_related, Transcription factor: HB Glutathione metabolism glutathione transferase activity lipid binding | details |
| TissueCFM001404 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Glycolysis / Gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor aldehyde dehydrogenase (NAD) activity sulfate assimilation carbohydrate transmembrane transport cellular response to oxidative stress glycerol ether metabolic process chloroplast thylakoid lumen response to stimulus regulation of catalytic activity | details |
| TissueCFM001438 | Transcription_related, Transcription factor: HB regulation of catalytic activity carbohydrate transmembrane transport response to stimulus regulation of cellular process chloroplast thylakoid lumen intracellular ribonucleoprotein complex viral nucleocapsid | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001822 | plasmodesma Phagosome plasma membrane tubulin complex Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity cellular response to gravity regulation of mitotic cell cycle response to cadmium ion glycerol transport regulation of cyclin-dependent protein serine/threonine kinase activity animal organ development microtubule-based process cellular water homeostasis water transport cell surface receptor signaling pathway ion transmembrane transport glycerol channel activity calcium-dependent phospholipid binding water channel activity structural constituent of cytoskeleton translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |