TissueCFM001782's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CMP-3-deoxy-D-manno-octulosonate biosynthesis | 0.002127502 | plantCyc |
| flavin biosynthesis I (bacteria and plants) | 0.004516602 | plantCyc |
| Lipopolysaccharide biosynthesis | 0.004516602 | KEGG pathway |
| Riboflavin metabolism | 0.004516602 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001824 | AT1G78210 (1.00E-43) | alpha/beta-Hydrolases superfamily protein |
| CRO_T012113 | AT3G54690 (6.00E-138) | SETH3|Sugar isomerase (SIS) family protein |
| CRO_T014141 | AT3G19090 (1.00E-24) | LARP6c|La related protein 6c |
| CRO_T019153 | - | - |
| CRO_T021588 | AT4G16563 (6.00E-37) | Eukaryotic aspartyl protease family protein |
| CRO_T026960 | AT2G20690 (2.00E-84) | lumazine-binding family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000887 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis Basal transcription factors SNARE interactions in vesicular transport cis-Golgi network | details |
| TissueCFM000940 | trans, trans-farnesyl diphosphate biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Lipopolysaccharide biosynthesis dimethylallyltranstransferase activity geranyltranstransferase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Terpenoid backbone biosynthesis isoprenoid biosynthetic process isomerase activity MAPK signaling pathway - plant carbohydrate binding peroxidase activity | details |
| TissueCFM000942 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis aspartic-type endopeptidase activity isomerase activity protein catabolic process carbohydrate binding plant-type cell wall | details |
| TissueCFM001105 | Basal transcription factors cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001584 | plasma membrane Riboflavin metabolism Sulfur metabolism D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) 3'(2'),5'-bisphosphate nucleotidase activity chloroplast accumulation movement phosphate-containing compound metabolic process chloroplast avoidance movement glucose transmembrane transport glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM001614 | cyclic pyranopterin monophosphate synthase activity molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor biosynthetic process regulation of signal transduction Folate biosynthesis Basal transcription factors small GTPase mediated signal transduction | details |
| TissueCFM001764 | Lipopolysaccharide biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation intracellular ribonucleoprotein complex | details |
| TissueCFM001816 | Drug metabolism - cytochrome P450 Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) xylogalacturonan biosynthesis phosphatidylinositol dephosphorylation exonuclease activity N,N-dimethylaniline monooxygenase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis NADP binding oxidation-reduction process flavin adenine dinucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |