TissueCFM000942's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CMP-3-deoxy-D-manno-octulosonate biosynthesis | 0.000709167 | plantCyc |
| Lipopolysaccharide biosynthesis | 0.001595037 | KEGG pathway |
| aspartic-type endopeptidase activity | 0.033875656 | GO:0004190 |
| isomerase activity | 0.033875656 | GO:0016853 |
| protein catabolic process | 0.035991032 | GO:0030163 |
| carbohydrate binding | 0.042583618 | GO:0030246 |
| plant-type cell wall | 0.045465041 | GO:0009505 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001824 | AT1G78210 (1.00E-43) | alpha/beta-Hydrolases superfamily protein |
| CRO_T008841 | - | - |
| CRO_T008896 | AT5G56310 (2.00E-103) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T011314 | - | - |
| CRO_T012113 | AT3G54690 (6.00E-138) | SETH3|Sugar isomerase (SIS) family protein |
| CRO_T021588 | AT4G16563 (6.00E-37) | Eukaryotic aspartyl protease family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000339 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Tify Lipopolysaccharide biosynthesis xylan biosynthetic process | details |
| TissueCFM000887 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis Basal transcription factors SNARE interactions in vesicular transport cis-Golgi network | details |
| TissueCFM000940 | trans, trans-farnesyl diphosphate biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Lipopolysaccharide biosynthesis dimethylallyltranstransferase activity geranyltranstransferase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Terpenoid backbone biosynthesis isoprenoid biosynthetic process isomerase activity MAPK signaling pathway - plant carbohydrate binding peroxidase activity | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001764 | Lipopolysaccharide biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation intracellular ribonucleoprotein complex | details |
| TissueCFM001782 | CMP-3-deoxy-D-manno-octulosonate biosynthesis flavin biosynthesis I (bacteria and plants) Lipopolysaccharide biosynthesis Riboflavin metabolism | details |
Expression profiles
 Show details about module gene expression profiling |