TissueCFM001282's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Basal transcription factors | 0.016280211 | KEGG pathway |
| Ras signaling pathway | 0.016280211 | KEGG pathway |
| early endosome membrane | 0.017344948 | GO:0031901 |
| DNA-templated transcription, initiation | 0.039645093 | GO:0006352 |
| exocytosis | 0.039645093 | GO:0006887 |
| protein transport | 0.039645093 | GO:0015031 |
| vesicle fusion | 0.039645093 | GO:0006906 |
| translational initiation | 0.039645093 | GO:0006413 |
| small GTPase mediated signal transduction | 0.043320382 | GO:0007264 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003362 | AT1G08500 (2.00E-24) | ENODL18|early nodulin-like protein 18 |
| CRO_T005207 | AT4G19640 (2.00E-65) | ATRAB-F2B|ARABIDOPSIS RAB GTPASE HOMOLOG F2B; RAB-F2B|RAB GTPASE HOMOLOG F2B |
| CRO_T009101 | AT4G34430 (0) | ATSWI3D|SWITCH/SUCROSE NONFERMENTING 3D |
| CRO_T011757 | AT2G33470 (9.00E-80) | ATGLTP1|ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1; GLTP1|glycolipid transfer protein 1 |
| CRO_T012967 | AT4G23060 (0.00000006) | IQD22|IQ-domain 22 |
| CRO_T016187 | AT4G31720 (4.00E-49) | STG1|SALT TOLERANCE DURING GERMINATION 1; TAF10|TBP-ASSOCIATED FACTOR 10; TAFII15|TBP-associated factor II 15 |
| CRO_T018378 | AT2G17110 (1.00E-54) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T025801 | AT1G04760 (2.00E-102) | ATVAMP726|vesicle-associated membrane protein 726 |
| CRO_T030099 | AT5G55640 (2.00E-38) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001093 | superpathway of proto- and siroheme biosynthesis heme O biosynthetic process protoheme IX farnesyltransferase activity Tyrosine metabolism chaperone binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM001187 | formation of glycosidic bonds, GlycosylTransferases: GTnc NADP+ binding steroid dehydrogenase activity alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts Basal transcription factors cation transmembrane transporter activity response to absence of light response to toxic substance response to red light response to far red light calcium-transporting ATPase activity cation transmembrane transport response to cold DNA-templated transcription, initiation calcium ion transmembrane transport nuclear body response to water deprivation response to salt stress translational initiation | details |
| TissueCFM001411 | Betalain biosynthesis Tyrosine metabolism Ino80 complex oxidoreductase activity, acting on single donors with incorporation of molecular oxygen cellular aromatic compound metabolic process chromatin remodeling ferrous iron binding | details |
| TissueCFM001567 | site-specific DNA-methyltransferase (adenine-specific) activity phosphatidic acid transporter activity protein methyltransferase activity DNA methylation on adenine cellular response to stimulus tissue development plant organ development phospholipid transport response to virus negative regulation of defense response to virus anatomical structure morphogenesis regulation of response to stimulus mitochondrial intermembrane space protein methylation response to organic substance response to bacterium Tyrosine metabolism defense response to other organism response to osmotic stress single-organism cellular process translational initiation regulation of cellular process MAPK signaling pathway - plant RNA transport | details |
| TissueCFM001691 | diacylglycerol and triacylglycerol biosynthesis N-Glycan biosynthesis Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase | details |
| TissueCFM001750 | alcohol dehydrogenase (NADP+) activity NADP+ binding steroid dehydrogenase activity clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit aspartate kinase activity L-homoserine biosynthesis nuclear body L-lysine biosynthesis VI detoxification of reactive carbonyls in chloroplasts structural molecule activity response to toxic substance response to absence of light response to far red light response to red light amino acid binding DNA-templated transcription, initiation response to cold embryo sac development 2-Oxocarboxylic acid metabolism Basal transcription factors protein homodimerization activity cellular amino acid biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Endocytosis Ribosome biogenesis in eukaryotes translation initiation factor activity response to salt stress rRNA processing response to water deprivation translational initiation | details |
| TissueCFM001783 | Basal transcription factors DNA-templated transcription, initiation transcription, DNA-templated Transcription_related, Transcription factor: G2-like ribonucleoside binding DNA binding histone binding translational initiation DNA-directed RNA polymerase activity translation initiation factor activity | details |
| TissueCFM001845 | membrane fusion Ubiquitin_Proteasome_system, E3: RING nuclear envelope reassembly mitotic sister chromatid cohesion Transcription_related, Transcription regulator: SNF2 Cell cycle - yeast single organism reproductive process Golgi organization regulation of gene expression Basal transcription factors ubiquitin binding solute:proton antiporter activity chromatin binding metal ion binding SNAP receptor activity S-adenosylmethionine-dependent methyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process hydrogen ion transmembrane transport vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |