TissueCFM001815's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| modulation by symbiont of host calcium or calmodulin-mediated signal transduction | 0.00347492 | GO:0075133 |
| detection of calcium ion | 0.00347492 | GO:0005513 |
| regulation of calcium or calmodulin-mediated signal transduction in response to host | 0.00347492 | GO:0075177 |
| Ras signaling pathway | 0.004071992 | KEGG pathway |
| regulation of photomorphogenesis | 0.004559822 | GO:0010099 |
| Transcription_related, Transcription regulator: GNAT | 0.004602101 | TF family |
| calcium-mediated signaling | 0.00468941 | GO:0019722 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012867 | AT3G02980 (3.00E-75) | MCC1|MEIOTIC CONTROL OF CROSSOVERS1 |
| CRO_T020938 | AT3G28460 (6.00E-105) | methyltransferases |
| CRO_T023607 | AT1G28280 (3.00E-48) | VQ motif-containing protein |
| CRO_T025648 | AT4G00467 (4.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T028555 | AT1G05990 (7.00E-25) | RHS1|ROOT HAIR SPECIFIC 1 |
| CRO_T031123 | AT2G03390 (2.00E-94) | uvrB/uvrC motif-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000792 | modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host Ras signaling pathway regulation of photomorphogenesis calcium-mediated signaling protein binding 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000851 | L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion seed maturation calcium-mediated signaling regulation of photomorphogenesis cytoplasmic microtubule organization Transcription_related, Transcription factor: C2H2 oxidation-reduction process seed germination Ascorbate and aldarate metabolism MAPK signaling pathway - yeast Ras signaling pathway L-iditol 2-dehydrogenase activity | details |
| TissueCFM000955 | Thiamine metabolism Transcription_related, Transcription regulator: GNAT GTPase activity GTP binding | details |
| TissueCFM001294 | CO2 fixation into oxaloacetate (anaplerotic) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cytoplasm L-glutamine biosynthesis III phosphoenolpyruvate carboxylase activity glutathione binding diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolysis IV (plant cytosol) 6-phosphofructokinase activity translational elongation peptidyl-serine phosphorylation carbon fixation tricarboxylic acid cycle auxin-activated signaling pathway leaf development protein autophosphorylation carbohydrate phosphorylation abscisic acid-activated signaling pathway glutathione metabolic process glycolytic process through fructose-6-phosphate Glutathione metabolism Glycolysis / Gluconeogenesis glutathione transferase activity nucleotidyltransferase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity translation elongation factor activity stromule intracellular signal transduction | details |
| TissueCFM001394 | Proteasome proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: Trihelix oxidation-reduction process regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion snRNA transcription calcium-mediated signaling proteasome assembly regulation of photomorphogenesis positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Rab GDP-dissociation inhibitor activity polyubiquitin binding maturation of LSU-rRNA glucose metabolic process L-ascorbate peroxidase activity nuclear proteasome complex cytosolic proteasome complex ER-associated ubiquitin-dependent protein catabolic process ascorbate glutathione cycle L-ascorbate degradation V | details |
| TissueCFM001812 | translational elongation cell part | details |
| TissueCFM001842 | response to stress Transcription_related, Transcription factor: NAC Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |