TissueCFM001294's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CO2 fixation into oxaloacetate (anaplerotic) | 0.003900421 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.005131975 | kinase family |
| cytoplasm | 0.005404454 | GO:0005737 |
| L-glutamine biosynthesis III | 0.010225752 | plantCyc |
| phosphoenolpyruvate carboxylase activity | 0.0117659 | GO:0008964 |
| glutathione binding | 0.0117659 | GO:0043295 |
| diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 0.0117659 | GO:0047334 |
| glycolysis IV (plant cytosol) | 0.014259339 | plantCyc |
| 6-phosphofructokinase activity | 0.022051284 | GO:0003872 |
| translational elongation | 0.031695107 | GO:0006414 |
| peptidyl-serine phosphorylation | 0.031695107 | GO:0018105 |
| carbon fixation | 0.031695107 | GO:0015977 |
| tricarboxylic acid cycle | 0.031695107 | GO:0006099 |
| auxin-activated signaling pathway | 0.031695107 | GO:0009734 |
| leaf development | 0.031695107 | GO:0048366 |
| protein autophosphorylation | 0.031695107 | GO:0046777 |
| carbohydrate phosphorylation | 0.031695107 | GO:0046835 |
| abscisic acid-activated signaling pathway | 0.031695107 | GO:0009738 |
| glutathione metabolic process | 0.031695107 | GO:0006749 |
| glycolytic process through fructose-6-phosphate | 0.031695107 | GO:0061615 |
| Glutathione metabolism | 0.033141677 | KEGG pathway |
| Glycolysis / Gluconeogenesis | 0.033141677 | KEGG pathway |
| glutathione transferase activity | 0.037165202 | GO:0004364 |
| nucleotidyltransferase activity | 0.037165202 | GO:0016779 |
| calmodulin-dependent protein kinase activity | 0.037165202 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.037165202 | GO:0009931 |
| translation elongation factor activity | 0.037165202 | GO:0003746 |
| stromule | 0.044134586 | GO:0010319 |
| intracellular signal transduction | 0.04865897 | GO:0035556 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001017 | AT1G07920 (0) | GTP binding Elongation factor Tu family protein |
| CRO_T021268 | AT1G53310 (0) | ATPPC1|phosphoenolpyruvate carboxylase 1; PEPC1|PEP(PHOSPHOENOLPYRUVATE) CARBOXYLASE 1 |
| CRO_T022850 | - | - |
| CRO_T025648 | AT4G00467 (4.00E-16) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T026762 | AT1G20950 (0) | Phosphofructokinase family protein |
| CRO_T032122 | AT1G12680 (2.00E-138) | PEPKR2|phosphoenolpyruvate carboxylase-related kinase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000792 | modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host Ras signaling pathway regulation of photomorphogenesis calcium-mediated signaling protein binding 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001121 | snRNA transcription Rab GDP-dissociation inhibitor activity maturation of LSU-rRNA regulation of catalytic activity translational elongation nucleotidyltransferase activity translation elongation factor activity protein transport small GTPase mediated signal transduction | details |
| TissueCFM001291 | plasma membrane cytoplasm intracellular signal transduction endoplasmic reticulum-Golgi intermediate compartment membrane nitrogen fixation oxygen transport vacuolar proton-transporting V-type ATPase complex assembly Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase calcium-dependent cysteine-type endopeptidase activity oxygen transporter activity oxygen binding COPII vesicle coat carbohydrate transmembrane transport MAPK signaling pathway - plant Plant-pathogen interaction peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation | details |
| TissueCFM001360 | Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I positive regulation of mitochondrial translation mitochondrial respiratory chain complex IV assembly integral component of mitochondrial inner membrane Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway phosphoprotein phosphatase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calmodulin binding protein dephosphorylation intracellular signal transduction | details |
| TissueCFM001394 | Proteasome proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: Trihelix oxidation-reduction process regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion snRNA transcription calcium-mediated signaling proteasome assembly regulation of photomorphogenesis positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Rab GDP-dissociation inhibitor activity polyubiquitin binding maturation of LSU-rRNA glucose metabolic process L-ascorbate peroxidase activity nuclear proteasome complex cytosolic proteasome complex ER-associated ubiquitin-dependent protein catabolic process ascorbate glutathione cycle L-ascorbate degradation V | details |
| TissueCFM001415 | glycolysis IV (plant cytosol) Transcription_related, Transcription factor: Trihelix prespliceosome catalytic step 1 spliceosome post-mRNA release spliceosomal complex Prp19 complex glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity maturation of LSU-rRNA glycolytic process through fructose-6-phosphate spliceosomal complex assembly glucose metabolic process carbohydrate phosphorylation precatalytic spliceosome gluconeogenesis I glycolysis I (from glucose 6-phosphate) sucrose biosynthesis I (from photosynthesis) translational elongation cytoplasm catalytic step 2 spliceosome 6-phosphofructokinase activity nucleotidyltransferase activity translation elongation factor activity cytosolic large ribosomal subunit | details |
| TissueCFM001778 | Carbon metabolism L-serine biosynthesis spermidine biosynthesis I spermine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthetic process spermine biosynthetic process S-adenosylmethioninamine biosynthetic process spermidine biosynthetic process Cysteine and methionine metabolism adenosylmethionine decarboxylase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity FMN binding protein serine/threonine phosphatase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation calmodulin binding | details |
| TissueCFM001812 | translational elongation cell part | details |
| TissueCFM001815 | modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host Ras signaling pathway regulation of photomorphogenesis Transcription_related, Transcription regulator: GNAT calcium-mediated signaling | details |
| TissueCFM001842 | response to stress Transcription_related, Transcription factor: NAC Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |