TissueCFM001823's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fructose 1,6-bisphosphate 1-phosphatase activity | 0.001240768 | GO:0042132 |
| Transcription_related, Transcription factor: NAC | 0.013051924 | TF family |
| Calvin-Benson-Bassham cycle | 0.027525786 | plantCyc |
| gluconeogenesis I | 0.027525786 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.027525786 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.027525786 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.027525786 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.028537077 | plantCyc |
| Fatty acid metabolism | 0.031780773 | KEGG pathway |
| dephosphorylation | 0.043888775 | GO:0016311 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003079 | AT3G54050 (5.00E-151) | HCEF1|high cyclic electron flow 1 |
| CRO_T010693 | AT5G59770 (3.00E-38) | Protein-tyrosine phosphatase-like, PTPLA |
| CRO_T015680 | AT1G45207 (2.00E-33) | Remorin family protein |
| CRO_T021242 | AT5G09330 (8.00E-35) | ANAC082|NAC domain containing protein 82; VNI1|VND-interacting 1 |
| CRO_T025351 | AT2G01190 (2.00E-91) | PDE331|PIGMENT DEFECTIVE 331 |
| CRO_T032517 | AT1G02960 (2.00E-07) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000378 | indole-3-acetate biosynthesis I Tryptophan metabolism N,N-dimethylaniline monooxygenase activity secondary active sulfate transmembrane transporter activity sulfate transmembrane transport cellular protein metabolic process response to stress NADP binding | details |
| TissueCFM000717 | Transcription_related, Transcription factor: WRKY lipoate biosynthesis and incorporation I Lipoic acid metabolism Tropane, piperidine and pyridine alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transport microtubule severing protein lipoylation glycolipid metabolic process lipoate biosynthetic process periplasmic space Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase polyamine binding lipoate synthase activity glucosyltransferase activity | details |
| TissueCFM000822 | cysteinyl-tRNA aminoacylation tRNA wobble position uridine thiolation regulation of programmed cell death cristae formation sulfurtransferase activity cysteine-tRNA ligase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis polar nucleus fusion Aminoacyl-tRNA biosynthesis methyltransferase activity | details |
| TissueCFM001012 | Transcription_related, Transcription factor: C2C2-YABBY secondary active sulfate transmembrane transporter activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) sulfate transmembrane transport cellular protein metabolic process Cul4-RING E3 ubiquitin ligase complex multicellular organism development small-subunit processome | details |
| TissueCFM001263 | 5-deoxystrigol biosynthesis sulfur compound metabolic process purine ribonucleotide metabolic process adenylylsulfatase activity drug transmembrane transport | details |
| TissueCFM001478 | rRNA (adenine-N6,N6-)-dimethyltransferase activity L-serine biosynthesis damaged DNA binding oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor nucleotide-excision repair rRNA methylation photorespiration response to cold NAD binding very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process response to stress Fatty acid metabolism | details |
| TissueCFM001781 | calcium-dependent cysteine-type endopeptidase activity nucleotide-excision repair vacuolar proton-transporting V-type ATPase complex assembly endoplasmic reticulum-Golgi intermediate compartment membrane damaged DNA binding COPII vesicle coat very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process Fatty acid metabolism Plant-pathogen interaction | details |
| TissueCFM001842 | response to stress Transcription_related, Transcription factor: NAC Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |