TissueCFM001844's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: EIL | 0.001417832 | TF family |
| rRNA (cytosine-N4-)-methyltransferase activity | 0.00521215 | GO:0071424 |
| diaminopimelate decarboxylase activity | 0.00521215 | GO:0008836 |
| organic acid transmembrane transporter activity | 0.005790079 | GO:0005342 |
| rRNA base methylation | 0.015717989 | GO:0070475 |
| organic acid transmembrane transport | 0.015717989 | GO:1903825 |
| lysine biosynthetic process via diaminopimelate | 0.015717989 | GO:0009089 |
| L-lysine biosynthesis VI | 0.018682368 | plantCyc |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.018682368 | plantCyc |
| phosphatidylcholine acyl editing | 0.02255245 | plantCyc |
| phospholipases | 0.02255245 | plantCyc |
| lipid catabolic process | 0.025685788 | GO:0016042 |
| Biosynthesis of amino acids | 0.038573505 | KEGG pathway |
| MAPK signaling pathway - plant | 0.038573505 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005278 | AT1G78560 (3.00E-139) | Sodium Bile acid symporter family |
| CRO_T007356 | AT5G06540 (1.00E-91) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T008100 | AT2G39220 (2.00E-159) | PLP6|PATATIN-like protein 6 |
| CRO_T016900 | AT4G26180 (2.00E-27) | CoAc2|CoA Carrier 2 |
| CRO_T017077 | AT3G20770 (4.00E-36) | EIN3|ETHYLENE-INSENSITIVE3 |
| CRO_T020989 | AT5G10910 (6.00E-121) | mraW methylase family protein |
| CRO_T022512 | AT3G14390 (0) | Pyridoxal-dependent decarboxylase family protein |
| CRO_T023313 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000121 | Biosynthesis of amino acids ornithine carbamoyltransferase activity histidinol dehydrogenase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) L-histidine biosynthesis ornithine-citrulline shuttle urea cycle organic acid transmembrane transporter activity | details |
| TissueCFM000433 | N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity rRNA (cytosine-N4-)-methyltransferase activity spermine:oxygen oxidoreductase (spermidine-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity spermine and spermidine degradation III Arginine and proline metabolism rRNA base methylation | details |
| TissueCFM000550 | DNA binding zinc ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc cell plate formation involved in plant-type cell wall biogenesis nuclease activity potassium ion transmembrane transporter activity intracellular ribonucleoprotein complex extrinsic component of membrane viral nucleocapsid | details |
| TissueCFM000663 | ruffle membrane regulation of ruffle assembly microgametogenesis regulation of cell cycle response to starvation lysine biosynthetic process via diaminopimelate megagametogenesis systemic acquired resistance, salicylic acid mediated signaling pathway L-lysine biosynthesis VI phospholipid remodeling (phosphatidylcholine, yeast) Biosynthesis of amino acids phosphatidylcholine acyl editing phospholipases L,L-diaminopimelate aminotransferase activity lipid catabolic process protein polyubiquitination response to cytokinin protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process vesicle-mediated transport phosphatidylinositol binding | details |
| TissueCFM000754 | extended VTC2 cycle VTC2 cycle Transcription_related, Transcription factor: EIL GDP-L-galactose phosphorylase activity GDP-D-glucose phosphorylase activity rRNA (pseudouridine) methyltransferase activity L-ascorbate biosynthesis I (L-galactose pathway) transcription coactivator activity rRNA base methylation Arachidonic acid metabolism Ascorbate and aldarate metabolism Basal transcription factors maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) transcription from RNA polymerase II promoter nucleotidyltransferase activity protein disulfide oxidoreductase activity Ribosome biogenesis in eukaryotes MAPK signaling pathway - plant cell redox homeostasis | details |
| TissueCFM000881 | cytokinin dehydrogenase activity cytokinin metabolic process Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding diaminopimelate decarboxylase activity cytokinins degradation L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Biosynthesis of amino acids | details |
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM000992 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors ruffle membrane flavin adenine dinucleotide binding diaminopimelate decarboxylase activity regulation of ruffle assembly cytokinins degradation L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate phosphatidylinositol binding metal ion binding Biosynthesis of amino acids oxidation-reduction process | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001536 | Cytochrome_P450, Cytochrome P450: CYP85A brassinosteroid biosynthesis I pyrimidine deoxyribonucleosides salvage rRNA (cytosine-N4-)-methyltransferase activity nucleobase-containing compound biosynthetic process Brassinosteroid biosynthesis Pyrimidine metabolism phosphate-containing compound metabolic process rRNA base methylation brassinosteroid homeostasis sterol metabolic process brassinosteroid biosynthetic process multicellular organism development | details |
| TissueCFM001566 | ubiquitin protein ligase activity proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: RING TBP-class protein binding protein histidine kinase binding translation initiation factor binding proteasome-activating ATPase activity cellular response to sucrose stimulus secondary growth negative regulation of iron ion transport regulation of chlorophyll catabolic process cellular response to cold cellular response to abscisic acid stimulus regulation of meristem development Transcription_related, Transcription factor: Orphans phosphorelay sensor kinase activity leaf senescence regulation of seed germination positive regulation of RNA polymerase II transcriptional preinitiation complex assembly response to osmotic stress cellular response to phosphate starvation peptidyl-histidine phosphorylation pollen germination phloem or xylem histogenesis regulation of flower development zinc ion binding ER-associated ubiquitin-dependent protein catabolic process eukaryotic translation initiation factor 3 complex, eIF3m cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex signal transduction by protein phosphorylation regulation of translational initiation formation of translation preinitiation complex protein polyubiquitination phosphorelay signal transduction system eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex defense response to bacterium protein ubiquitination involved in ubiquitin-dependent protein catabolic process translation initiation factor activity | details |
| TissueCFM001581 | organic acid transmembrane transport pattern recognition receptor signaling pathway defense response to bacterium, incompatible interaction organic acid transmembrane transporter activity Plant-pathogen interaction Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII protein autophosphorylation peptidyl-tyrosine phosphorylation proteasome-mediated ubiquitin-dependent protein catabolic process non-membrane spanning protein tyrosine kinase activity | details |
| TissueCFM001685 | cellular response to starvation Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family transport of virus in host, cell to cell systemic acquired resistance, salicylic acid mediated signaling pathway lysine biosynthetic process via diaminopimelate ethylene biosynthesis I (plants) L-lysine biosynthesis VI phospholipid remodeling (phosphatidylcholine, yeast) intracellular ribonucleoprotein complex myosin complex viral nucleocapsid histone acetylation lipid catabolic process phosphatidylcholine acyl editing phospholipases response to cytokinin L,L-diaminopimelate aminotransferase activity motor activity histone acetyltransferase activity Biosynthesis of amino acids Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |