TissueCFM001536's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP85A | 0.000886394 | CYP450 family |
| brassinosteroid biosynthesis I | 0.004251233 | plantCyc |
| pyrimidine deoxyribonucleosides salvage | 0.004251233 | plantCyc |
| rRNA (cytosine-N4-)-methyltransferase activity | 0.006436646 | GO:0071424 |
| nucleobase-containing compound biosynthetic process | 0.007710803 | GO:0034654 |
| Brassinosteroid biosynthesis | 0.009286528 | KEGG pathway |
| Pyrimidine metabolism | 0.009286528 | KEGG pathway |
| phosphate-containing compound metabolic process | 0.016693165 | GO:0006796 |
| rRNA base methylation | 0.016693165 | GO:0070475 |
| brassinosteroid homeostasis | 0.02179568 | GO:0010268 |
| sterol metabolic process | 0.02179568 | GO:0016125 |
| brassinosteroid biosynthetic process | 0.02179568 | GO:0016132 |
| multicellular organism development | 0.030174052 | GO:0007275 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006344 | AT5G23070 (2.00E-78) | TK1b|thymidine kinase 1b |
| CRO_T020989 | AT5G10910 (6.00E-121) | mraW methylase family protein |
| CRO_T021507 | AT3G59670 (1.00E-43) | unknown protein |
| CRO_T025407 | AT4G19230 (3.00E-63) | CYP707A1|cytochrome P450, family 707, subfamily A, polypeptide 1 |
| CRO_T026739 | AT4G28430 (1.00E-75) | Reticulon family protein |
| CRO_T031929 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000433 | N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity rRNA (cytosine-N4-)-methyltransferase activity spermine:oxygen oxidoreductase (spermidine-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity spermine and spermidine degradation III Arginine and proline metabolism rRNA base methylation | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001030 | Endocytosis Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) phosphoprotein phosphatase activity ubiquitin protein ligase binding GTPase activator activity positive regulation of GTPase activity dephosphorylation | details |
| TissueCFM001531 | Cytochrome_P450, Cytochrome P450: CYP85A brassinosteroid biosynthesis I Brassinosteroid biosynthesis 5'-3' exodeoxyribonuclease activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity nuclear chromosome, telomeric region L-lysine transmembrane transporter activity interstrand cross-link repair arginine transmembrane transport protection from non-homologous end joining at telomere L-histidine transmembrane transport L-lysine transmembrane transport double-strand break repair via nonhomologous end joining damaged DNA binding brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process multicellular organism development | details |
| TissueCFM001730 | intrinsic component of membrane Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) single-organism developmental process protein catabolic process aspartic-type endopeptidase activity ubiquitin protein ligase binding | details |
| TissueCFM001844 | Transcription_related, Transcription factor: EIL rRNA (cytosine-N4-)-methyltransferase activity diaminopimelate decarboxylase activity organic acid transmembrane transporter activity rRNA base methylation organic acid transmembrane transport lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing phospholipases lipid catabolic process Biosynthesis of amino acids MAPK signaling pathway - plant | details |
Expression profiles
 Show details about module gene expression profiling |