TissueCFM001846's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fatty acid elongation -- saturated | 3.50E-05 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.000107784 | plantCyc |
| Fatty acid metabolism | 0.000143204 | KEGG pathway |
| palmitate biosynthesis II (bacteria and plants) | 0.000211326 | plantCyc |
| regulation of cell differentiation | 0.002024232 | GO:0045595 |
| regulation of RNA splicing | 0.002024232 | GO:0043484 |
| phospholipid catabolic process | 0.002024232 | GO:0009395 |
| PI3K-Akt signaling pathway | 0.002126874 | KEGG pathway |
| hydro-lyase activity | 0.007082717 | GO:0016836 |
| phospholipase activity | 0.007082717 | GO:0004620 |
| O-acyltransferase activity | 0.008765191 | GO:0008374 |
| mRNA processing | 0.010613091 | GO:0006397 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.013665323 | plantCyc |
| phosphatidylcholine acyl editing | 0.019918886 | plantCyc |
| phospholipases | 0.019918886 | plantCyc |
| fatty acid biosynthetic process | 0.026996751 | GO:0006633 |
| cytoplasmic mRNA processing body | 0.030987128 | GO:0000932 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001797 | AT1G43190 (0) | PTB3|polypyrimidine tract-binding protein 3 |
| CRO_T006229 | AT4G19860 (1.00E-59) | alpha/beta-Hydrolases superfamily protein |
| CRO_T020074 | AT2G05990 (3.00E-99) | ENR1|ENOYL-ACP REDUCTASE 1; MOD1|MOSAIC DEATH 1 |
| CRO_T022125 | - | - |
| CRO_T025080 | AT2G22230 (7.00E-41) | Thioesterase superfamily protein |
| CRO_T025435 | AT5G22450 (4.00E-26) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001201 | Ubiquitin_Proteasome_system, E3: HECT intralumenal vesicle formation phospholipid catabolic process multivesicular body assembly nucleotide-sugar metabolic process dTDP-glucose 4,6-dehydratase activity UDP-glucose 4,6-dehydratase activity UDP-L-rhamnose biosynthesis phospholipase activity O-acyltransferase activity ubiquitin binding late endosome membrane phosphatidylcholine acyl editing phospholipases protein ubiquitination involved in ubiquitin-dependent protein catabolic process Amino sugar and nucleotide sugar metabolism Ubiquitin mediated proteolysis | details |
| TissueCFM001570 | eukaryotic translation initiation factor 3 complex, eIF3m cytosol Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: HECT nucleus phospholipid catabolic process Transcription_related, Transcription factor: C3H O-acyltransferase activity translation initiation factor binding phospholipase activity detoxification of reactive carbonyls in chloroplasts phosphatidylcholine acyl editing phospholipases traumatin and (Z)-3-hexen-1-yl acetate biosynthesis single-organism developmental process pollen germination eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex regulation of translational initiation formation of translation preinitiation complex protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TissueCFM001594 | nucleomorph Thyroid hormone signaling pathway DNA-directed RNA polymerase II, core complex response to zinc ion regulation of sequestering of zinc ion RNA polymerase II transcription cofactor activity zinc ion transmembrane transporter activity RNA polymerase II activity serine-type carboxypeptidase activity mediator complex zinc II ion transmembrane transport transcription from RNA polymerase II promoter regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Purine metabolism | details |
| TissueCFM001716 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of cell differentiation regulation of RNA splicing nucleus eukaryotic translation initiation factor 3 complex, eIF3m translation initiation factor binding nucleotide binding nucleic acid binding regulation of translational initiation mRNA processing formation of translation preinitiation complex pollen germination zinc ion binding cytoplasmic mRNA processing body eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex proteasome complex Proteasome embryo development ending in seed dormancy RNA transport translation initiation factor activity | details |
| TissueCFM001738 | Ubiquitin_Proteasome_system, E3: UBR-box Spliceosome macromolecule modification regulation of RNA splicing regulation of cell differentiation regulation of signal transduction aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mRNA processing RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |