TissueCFM001201's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: HECT | 0.002480143 | ubs family |
| intralumenal vesicle formation | 0.002951307 | GO:0070676 |
| phospholipid catabolic process | 0.002951307 | GO:0009395 |
| multivesicular body assembly | 0.002951307 | GO:0036258 |
| nucleotide-sugar metabolic process | 0.002951307 | GO:0009225 |
| dTDP-glucose 4,6-dehydratase activity | 0.007899577 | GO:0008460 |
| UDP-glucose 4,6-dehydratase activity | 0.007899577 | GO:0050377 |
| UDP-L-rhamnose biosynthesis | 0.009097083 | plantCyc |
| phospholipase activity | 0.012283874 | GO:0004620 |
| O-acyltransferase activity | 0.013680466 | GO:0008374 |
| ubiquitin binding | 0.013680466 | GO:0043130 |
| late endosome membrane | 0.017226269 | GO:0031902 |
| phosphatidylcholine acyl editing | 0.017377439 | plantCyc |
| phospholipases | 0.017377439 | plantCyc |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.023048169 | GO:0042787 |
| Amino sugar and nucleotide sugar metabolism | 0.028625431 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003009 | AT2G18245 (4.00E-49) | alpha/beta-Hydrolases superfamily protein |
| CRO_T006229 | AT4G19860 (1.00E-59) | alpha/beta-Hydrolases superfamily protein |
| CRO_T009930 | - | - |
| CRO_T011116 | AT1G01355 (1.00E-09) | Putative endonuclease or glycosyl hydrolase |
| CRO_T017399 | AT1G53500 (0) | ATMUM4|MUCILAGE-MODIFIED 4; ATRHM2|RHAMNOSE BIOSYNTHESIS 2 |
| CRO_T018993 | - | - |
| CRO_T029593 | AT2G42240 (0.00002) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001293 | multivesicular body assembly intralumenal vesicle formation ubiquitin binding late endosome membrane magnoflorine biosynthesis P-P-bond-hydrolysis-driven protein transmembrane transporter activity protein binding involved in protein folding chloroplast envelope cell death lipid biosynthetic process de-etiolation protein transmembrane transport protein metabolic process protein histidine kinase binding chaperone-mediated protein folding chloroplast outer membrane chloroplast organization metal ion binding S-adenosylmethionine-dependent methyltransferase activity | details |
| TissueCFM001570 | eukaryotic translation initiation factor 3 complex, eIF3m cytosol Ubiquitin_Proteasome_system, DUB: JAMM Ubiquitin_Proteasome_system, E3: HECT nucleus phospholipid catabolic process Transcription_related, Transcription factor: C3H O-acyltransferase activity translation initiation factor binding phospholipase activity detoxification of reactive carbonyls in chloroplasts phosphatidylcholine acyl editing phospholipases traumatin and (Z)-3-hexen-1-yl acetate biosynthesis single-organism developmental process pollen germination eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex regulation of translational initiation formation of translation preinitiation complex protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TissueCFM001668 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: ERF metal ion binding | details |
| TissueCFM001739 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity protein metabolic process riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP protein histidine kinase binding metal ion binding | details |
| TissueCFM001764 | Lipopolysaccharide biosynthesis CMP-3-deoxy-D-manno-octulosonate biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation intracellular ribonucleoprotein complex | details |
| TissueCFM001846 | fatty acid elongation -- saturated stearate biosynthesis II (bacteria and plants) Fatty acid metabolism palmitate biosynthesis II (bacteria and plants) regulation of cell differentiation regulation of RNA splicing phospholipid catabolic process PI3K-Akt signaling pathway hydro-lyase activity phospholipase activity O-acyltransferase activity mRNA processing octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) phosphatidylcholine acyl editing phospholipases fatty acid biosynthetic process cytoplasmic mRNA processing body | details |
Expression profiles
 Show details about module gene expression profiling |