TreatCFM000071's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| AMPK signaling pathway | 0.000150957 | KEGG pathway |
| Fatty acid elongation | 0.01258456 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.13.4: Leucine Rich Repeat Kinase III | 0.018451811 | kinase family |
| very long chain fatty acid biosynthesis I | 0.043292688 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.043292688 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001455 | AT2G39060 (4.00E-57) | AtSWEET9; SWEET9|Nodulin MtN3 family protein |
| CRO_T004592 | AT1G72460 (1.00E-53) | Leucine-rich repeat protein kinase family protein |
| CRO_T006669 | AT1G48370 (0) | YSL8|YELLOW STRIPE like 8 |
| CRO_T009540 | AT2G38570 (2.00E-69) | |
| CRO_T011355 | - | - |
| CRO_T011833 | AT3G42950 (5.00E-104) | Pectin lyase-like superfamily protein |
| CRO_T016735 | AT1G01120 (4.00E-119) | KCS1|3-ketoacyl-CoA synthase 1 |
| CRO_T020486 | - | - |
| CRO_T021071 | AT4G17270 (2.00E-60) | Mo25 family protein |
| CRO_T021072 | AT4G17270 (2.00E-70) | Mo25 family protein |
| CRO_T022575 | AT1G59560 (4.00E-11) | DAL2|DIAP1-like protein 2; SPL1|SP1-like 1 |
| CRO_T025088 | AT2G37820 (5.00E-15) | Cysteine/Histidine-rich C1 domain family protein |
| CRO_T025559 | AT1G79250 (0) | AGC1.7|AGC kinase 1.7 |
| CRO_T026373 | AT2G47490 (2.00E-42) | ATNDT1|NAD+ TRANSPORTER 1 |
| CRO_T031121 | AT5G35200 (3.00E-44) | ENTH/ANTH/VHS superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000016 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex cellular process localization mitochondrion organization 6,7-dimethyl-8-ribityllumazine synthase activity Transcription_related, Transcription factor: ARR-B riboflavin biosynthetic process | details |
| TreatCFM000018 | riboflavin synthase complex flavin biosynthesis I (bacteria and plants) Diterpenoid biosynthesis Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization gibberellin catabolic process C-19 gibberellin 2-beta-dioxygenase activity riboflavin biosynthetic process response to light stimulus Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TreatCFM000034 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex regulation of carbohydrate metabolic process mitochondrion organization L-methionine biosynthetic process from methylthioadenosine riboflavin biosynthetic process 6,7-dimethyl-8-ribityllumazine synthase activity eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor activity S-methyl-5-thioribose-1-phosphate isomerase activity Riboflavin metabolism regulation of translational initiation | details |
| TreatCFM000057 | flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin biosynthetic process mitochondrion organization anchored component of membrane pollen tube xyloglucan metabolic process cell wall biogenesis | details |
| TreatCFM000070 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex Transcription_related, Transcription factor: ARR-B 6,7-dimethyl-8-ribityllumazine synthase activity | details |
| TreatCFM000085 | riboflavin synthase complex Transcription_related, Transcription factor: C2C2-YABBY 6,7-dimethyl-8-ribityllumazine synthase activity leucocyanidin oxygenase activity Flavonoid biosynthesis Riboflavin metabolism anthocyanin biosynthesis proanthocyanidins biosynthesis from flavanols flavin biosynthesis I (bacteria and plants) inflorescence meristem growth specification of floral organ identity fruit development abaxial cell fate specification specification of organ position mitochondrion organization anthocyanin-containing compound biosynthetic process meristem structural organization riboflavin biosynthetic process regulation of flower development L-ascorbic acid binding | details |
| TreatCFM000378 | 6,7-dimethyl-8-ribityllumazine synthase activity ligase activity 1,2-alpha-L-fucosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin synthase complex flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Other glycan degradation Riboflavin metabolism Transcription_related, Transcription regulator: AUX/IAA riboflavin biosynthetic process mitochondrion organization folic acid-containing compound biosynthetic process auxin-activated signaling pathway | details |
| TreatCFM000534 | riboflavin synthase complex Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization riboflavin biosynthetic process phenylpropanoid biosynthetic process methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis superpathway of scopolin and esculin biosynthesis flavin biosynthesis I (bacteria and plants) syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis cell part triacylglycerol degradation Phenylpropanoid biosynthesis | details |
| TreatCFM000992 | L-glutamine degradation I L-histidine biosynthesis sphingolipid biosynthesis (plants) proton-transporting two-sector ATPase complex, catalytic domain transferase activity, transferring pentosyl groups ATPase activity, coupled to transmembrane movement of ions, rotational mechanism cation-transporting ATPase activity mitochondrion organization ATP biosynthetic process cellular amino acid biosynthetic process hydrogen ion transmembrane transporter activity Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM002057 | Phenylpropanoid biosynthesis cellular oxidant detoxification response to oxidative stress hydrogen peroxide catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |