TreatCFM000992's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-glutamine degradation I | 0.007950778 | plantCyc |
| L-histidine biosynthesis | 0.007950778 | plantCyc |
| sphingolipid biosynthesis (plants) | 0.007950778 | plantCyc |
| proton-transporting two-sector ATPase complex, catalytic domain | 0.009445018 | GO:0033178 |
| transferase activity, transferring pentosyl groups | 0.011553825 | GO:0016763 |
| ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | 0.011553825 | GO:0044769 |
| cation-transporting ATPase activity | 0.023095359 | GO:0019829 |
| mitochondrion organization | 0.026253857 | GO:0007005 |
| ATP biosynthetic process | 0.026253857 | GO:0006754 |
| cellular amino acid biosynthetic process | 0.033716079 | GO:0008652 |
| hydrogen ion transmembrane transporter activity | 0.038454745 | GO:0015078 |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.045356564 | kinase family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000031 | AT2G33320 (4.00E-33) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T007377 | AT2G02800 (3.00E-127) | APK2B|protein kinase 2B; Kin2|kinase 2 |
| CRO_T012004 | AT4G26900 (4.00E-88) | AT-HF|HIS HF |
| CRO_T014606 | AT2G34770 (9.00E-103) | ATFAH1|ARABIDOPSIS FATTY ACID HYDROXYLASE 1; FAH1|fatty acid hydroxylase 1 |
| CRO_T016084 | ATMG01190 (4.00E-66) | ATP1|ATP synthase subunit 1 |
| CRO_T022575 | AT1G59560 (4.00E-11) | DAL2|DIAP1-like protein 2; SPL1|SP1-like 1 |
| CRO_T033276 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000016 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex cellular process localization mitochondrion organization 6,7-dimethyl-8-ribityllumazine synthase activity Transcription_related, Transcription factor: ARR-B riboflavin biosynthetic process | details |
| TreatCFM000018 | riboflavin synthase complex flavin biosynthesis I (bacteria and plants) Diterpenoid biosynthesis Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization gibberellin catabolic process C-19 gibberellin 2-beta-dioxygenase activity riboflavin biosynthetic process response to light stimulus Transcription_related, Transcription factor: HB Transcription_related, Transcription factor: MYB | details |
| TreatCFM000034 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex regulation of carbohydrate metabolic process mitochondrion organization L-methionine biosynthetic process from methylthioadenosine riboflavin biosynthetic process 6,7-dimethyl-8-ribityllumazine synthase activity eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor activity S-methyl-5-thioribose-1-phosphate isomerase activity Riboflavin metabolism regulation of translational initiation | details |
| TreatCFM000057 | flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin biosynthetic process mitochondrion organization anchored component of membrane pollen tube xyloglucan metabolic process cell wall biogenesis | details |
| TreatCFM000070 | flavin biosynthesis I (bacteria and plants) riboflavin synthase complex Transcription_related, Transcription factor: ARR-B 6,7-dimethyl-8-ribityllumazine synthase activity | details |
| TreatCFM000071 | AMPK signaling pathway Fatty acid elongation Protein_kinases_phosphatases, PPC:1.13.4: Leucine Rich Repeat Kinase III very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II | details |
| TreatCFM000085 | riboflavin synthase complex Transcription_related, Transcription factor: C2C2-YABBY 6,7-dimethyl-8-ribityllumazine synthase activity leucocyanidin oxygenase activity Flavonoid biosynthesis Riboflavin metabolism anthocyanin biosynthesis proanthocyanidins biosynthesis from flavanols flavin biosynthesis I (bacteria and plants) inflorescence meristem growth specification of floral organ identity fruit development abaxial cell fate specification specification of organ position mitochondrion organization anthocyanin-containing compound biosynthetic process meristem structural organization riboflavin biosynthetic process regulation of flower development L-ascorbic acid binding | details |
| TreatCFM000378 | 6,7-dimethyl-8-ribityllumazine synthase activity ligase activity 1,2-alpha-L-fucosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc riboflavin synthase complex flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Other glycan degradation Riboflavin metabolism Transcription_related, Transcription regulator: AUX/IAA riboflavin biosynthetic process mitochondrion organization folic acid-containing compound biosynthetic process auxin-activated signaling pathway | details |
| TreatCFM000534 | riboflavin synthase complex Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity mitochondrion organization riboflavin biosynthetic process phenylpropanoid biosynthetic process methylquercetin biosynthesis polymethylated quercetin biosynthesis quercetin sulfate biosynthesis superpathway of scopolin and esculin biosynthesis flavin biosynthesis I (bacteria and plants) syringetin biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis cell part triacylglycerol degradation Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |