TreatCFM000110's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: LOB | 0.005838109 | TF family |
| chloroplast organization | 0.006191018 | GO:0009658 |
| chloroplast outer membrane | 0.006909786 | GO:0009707 |
| membrane part | 0.009021865 | GO:0044425 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003835 | - | - |
| CRO_T017192 | AT4G04980 (1.00E-11) | unknown protein |
| CRO_T017279 | - | - |
| CRO_T019029 | AT1G07900 (5.00E-47) | LBD1|LOB domain-containing protein 1 |
| CRO_T022773 | AT1G11070 (3.00E-76) | |
| CRO_T029677 | AT3G02410 (7.00E-17) | ICME-LIKE2|Isoprenylcysteine methylesterase-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000042 | Biosynthesis of amino acids L-histidine biosynthesis L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) Transcription_related, Transcription factor: LOB prephenate dehydratase activity arogenate dehydratase activity histidinol dehydrogenase activity chorismate mutase activity organic cation transport histidine biosynthetic process nitrogen utilization ammonium transmembrane transport L-phenylalanine biosynthetic process nucleoside metabolic process chloroplast stroma chloroplast outer membrane ammonium transmembrane transporter activity pollen development chloroplast organization cell wall organization or biogenesis | details |
| TreatCFM000327 | nucleoside metabolic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity dTDP biosynthetic process flavonoid biosynthetic process dTTP biosynthetic process dUDP biosynthetic process flavonoid glucuronidation thymidylate kinase activity catalytic activity uridylate kinase activity apigeninidin 5-O-glucoside biosynthesis luteolinidin 5-O-glucoside biosynthesis Pyrimidine metabolism intracellular membrane-bounded organelle integral component of membrane pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) formation of glycosidic bonds, GlycosylTransferases: GTnc pyrimidine deoxyribonucleotides de novo biosynthesis I cytokinin-O-glucosides biosynthesis chloroplast outer membrane chloroplast organization | details |
Expression profiles
 Show details about module gene expression profiling |