TreatCFM000327's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleoside metabolic process | 0.000137597 | GO:0009116 |
| quercetin 7-O-glucosyltransferase activity | 0.001705141 | GO:0080044 |
| quercetin 3-O-glucosyltransferase activity | 0.001705141 | GO:0080043 |
| dTDP biosynthetic process | 0.002569584 | GO:0006233 |
| flavonoid biosynthetic process | 0.002569584 | GO:0009813 |
| dTTP biosynthetic process | 0.002569584 | GO:0006235 |
| dUDP biosynthetic process | 0.002569584 | GO:0006227 |
| flavonoid glucuronidation | 0.002569584 | GO:0052696 |
| thymidylate kinase activity | 0.002698457 | GO:0004798 |
| catalytic activity | 0.005700396 | GO:0003824 |
| uridylate kinase activity | 0.005700396 | GO:0009041 |
| apigeninidin 5-O-glucoside biosynthesis | 0.009650832 | plantCyc |
| luteolinidin 5-O-glucoside biosynthesis | 0.009650832 | plantCyc |
| Pyrimidine metabolism | 0.01234262 | KEGG pathway |
| intracellular membrane-bounded organelle | 0.013322799 | GO:0043231 |
| integral component of membrane | 0.013322799 | GO:0016021 |
| pyrimidine deoxyribonucleotide phosphorylation | 0.016700947 | plantCyc |
| pyrimidine deoxyribonucleotides de novo biosynthesis II | 0.016700947 | plantCyc |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | 0.016700947 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.018207995 | cazy family |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.020321079 | plantCyc |
| cytokinin-O-glucosides biosynthesis | 0.021983908 | plantCyc |
| chloroplast outer membrane | 0.022543978 | GO:0009707 |
| chloroplast organization | 0.038337689 | GO:0009658 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002185 | - | - |
| CRO_T002641 | AT1G35510 (1.00E-140) | O-fucosyltransferase family protein |
| CRO_T002877 | AT2G30140 (3.00E-117) | UGT87A2|UDP-glucosyl transferase 87A2 |
| CRO_T003383 | AT3G16520 (2.00E-89) | UGT88A1|UDP-glucosyl transferase 88A1 |
| CRO_T008228 | AT4G28940 (1.00E-45) | Phosphorylase superfamily protein |
| CRO_T009074 | AT2G37440 (2.00E-121) | DNAse I-like superfamily protein |
| CRO_T012147 | AT5G59440 (9.00E-86) | ATTMPK.1|THYMIDYLATE KINASE.1; ATTMPK.2|THYMIDYLATE KINASE.2; ZEU1|ZEUS1 |
| CRO_T014225 | AT4G28940 (4.00E-67) | Phosphorylase superfamily protein |
| CRO_T017192 | AT4G04980 (1.00E-11) | unknown protein |
| CRO_T021617 | AT2G28120 (0) | Major facilitator superfamily protein |
| CRO_T022773 | AT1G11070 (3.00E-76) | |
| CRO_T027935 | AT3G09250 (3.00E-48) | Nuclear transport factor 2 (NTF2) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000042 | Biosynthesis of amino acids L-histidine biosynthesis L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) Transcription_related, Transcription factor: LOB prephenate dehydratase activity arogenate dehydratase activity histidinol dehydrogenase activity chorismate mutase activity organic cation transport histidine biosynthetic process nitrogen utilization ammonium transmembrane transport L-phenylalanine biosynthetic process nucleoside metabolic process chloroplast stroma chloroplast outer membrane ammonium transmembrane transporter activity pollen development chloroplast organization cell wall organization or biogenesis | details |
| TreatCFM000061 | ATPase activity, coupled to transmembrane movement of substances organic substance transport single-organism transport lipid transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III beta-galactosidase activity Transcription_related, Transcription factor: B3 | details |
| TreatCFM000110 | Transcription_related, Transcription factor: LOB chloroplast organization chloroplast outer membrane membrane part | details |
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000243 | DNA binding Transcription_related, Transcription regulator: HMG Transcription_related, Transcription factor: B3 | details |
| TreatCFM000249 | Antigen processing and presentation ATPase activity, coupled to transmembrane movement of substances hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: NF-YB organic substance transport photosynthetic acclimation regulation of vesicle fusion single-organism transport activation of GTPase activity lipid transport Transcription_related, Transcription factor: NAC regulation of transcription, DNA-templated | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000858 | extracellular region cytokinin-O-glucosides biosynthesis L-histidine biosynthesis histidinol dehydrogenase activity growth factor activity Biosynthesis of amino acids Ubiquitin mediated proteolysis chitinase activity chitin binding histidine biosynthetic process cell proliferation chitin catabolic process ubiquitin protein ligase binding formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM001245 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process oxidoreductase activity, acting on a sulfur group of donors thymidylate kinase activity UDP-glycosyltransferase activity DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation uridylate kinase activity NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity Base excision repair Pyrimidine metabolism crocetin esters biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) transferase activity, transferring hexosyl groups triacylglycerol degradation Transcription_related, Transcription factor: C2H2 NAD binding single-organism metabolic process | details |
| TreatCFM001331 | 3-deoxy-8-phosphooctulonate synthase activity thymidylate kinase activity response to extracellular stimulus dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process organ morphogenesis regulation of root development reactive oxygen species metabolic process lateral root development CMP-3-deoxy-D-manno-octulosonate biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) fruit development endoplasmic reticulum unfolded protein response uridylate kinase activity defense response to fungus, incompatible interaction pyrimidine deoxyribonucleotides de novo biosynthesis I endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex histone acetylation Transcription_related, Transcription regulator: mTERF Lipopolysaccharide biosynthesis jasmonic acid mediated signaling pathway response to ethylene Ras signaling pathway Pyrimidine metabolism biosynthetic process helicase activity RNA degradation | details |
Expression profiles
 Show details about module gene expression profiling |