TreatCFM000180's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-phenylalanine biosynthetic process | 0.001063594 | GO:0009094 |
| prephenate dehydratase activity | 0.002437583 | GO:0004664 |
| arogenate dehydratase activity | 0.002437583 | GO:0047769 |
| L-phenylalanine biosynthesis II | 0.003189368 | plantCyc |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.003189368 | plantCyc |
| amino acid binding | 0.012966867 | GO:0016597 |
| Biosynthesis of amino acids | 0.016554997 | KEGG pathway |
| chloroplast stroma | 0.046085517 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005372 | - | - |
| CRO_T016911 | AT1G08250 (1.00E-113) | ADT6|arogenate dehydratase 6 |
| CRO_T016981 | - | - |
| CRO_T026043 | - | - |
| CRO_T028996 | - | - |
| CRO_T033713 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000031 | L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellular response to gravity L-phenylalanine biosynthetic process response to cadmium ion prephenate dehydratase activity arogenate dehydratase activity microtubule-based process tubulin complex Phagosome | details |
| TreatCFM000046 | details | |
| TreatCFM000050 | details | |
| TreatCFM000065 | Cytochrome_P450, Cytochrome P450: CYP724A | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000111 | regulation of lipid kinase activity L-phenylalanine biosynthetic process L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) alkaloid metabolic process chromosomal part PAS complex prephenate dehydratase activity vinorine synthase activity arogenate dehydratase activity | details |
| TreatCFM000179 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) cyclin-dependent protein serine/threonine kinase activity regulation of cell cycle | details |
| TreatCFM000390 | Ubiquitin_Proteasome_system, DUB: JAMM L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthetic process oxalate metabolic process oxalate decarboxylase activity nutrient reservoir activity manganese ion binding carbohydrate transport amino acid binding proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |