TreatCFM000179's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | 0.000531915 | kinase family |
| cyclin-dependent protein serine/threonine kinase activity | 0.003722304 | GO:0004693 |
| regulation of cell cycle | 0.005847606 | GO:0051726 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005372 | - | - |
| CRO_T010007 | AT2G24765 (3.00E-36) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
| CRO_T020523 | AT4G13020 (1.00E-158) | MHK|Protein kinase superfamily protein |
| CRO_T026043 | - | - |
| CRO_T028996 | - | - |
| CRO_T033713 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000046 | details | |
| TreatCFM000050 | details | |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000150 | peptidase activity | details |
| TreatCFM000180 | L-phenylalanine biosynthetic process prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) amino acid binding Biosynthesis of amino acids chloroplast stroma | details |
| TreatCFM000526 | Cytochrome_P450, Cytochrome P450: CYP78A | details |
| TreatCFM000716 | CURI complex UTP-C complex Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) Transcription_related, Transcription factor: ARR-B transcription factor activity, sequence-specific DNA binding cyclin-dependent protein serine/threonine kinase activity transcription, DNA-templated positive regulation of anthocyanin metabolic process gibberellic acid mediated signaling pathway regulation of photomorphogenesis positive regulation of circadian rhythm regulation of cell cycle red, far-red light phototransduction Transcription_related, Transcription factor: bZIP response to UV-B ribosomal small subunit assembly regulation of transcription, DNA-templated Circadian rhythm - plant double-stranded DNA binding phosphorelay signal transduction system rRNA processing nucleus response to abscisic acid Ribosome biogenesis in eukaryotes | details |
| TreatCFM000731 | PI3K-Akt signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001482 | Transcription_related, Transcription factor: Alfin-like mevalonate pathway I pyridoxal 5'-phosphate salvage I FAD diphosphatase activity pyridoxal kinase activity mevalonate kinase activity flavin-containing compound metabolic process peptidyl-cysteine oxidation anaerobic respiration pyridoxal 5'-phosphate salvage detection of hypoxia Taurine and hypotaurine metabolism Vitamin B6 metabolism phosphorylation zinc ion binding isoprenoid biosynthetic process | details |
| TreatCFM001592 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II blue light photoreceptor activity mevalonate kinase activity blue light signaling pathway entrainment of circadian clock shade avoidance positive regulation of abscisic acid-activated signaling pathway regulation of stomatal closure anthocyanin-containing compound metabolic process programmed cell death phosphatidic acid metabolic process choline biosynthesis III mevalonate pathway I photoperiodism, flowering phospholipase D activity regulation of stomatal movement nucleoside metabolic process nuclear body Transcription_related, Transcription factor: G2-like phosphatidate metabolism, as a signaling molecule positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis response to cold isoprenoid biosynthetic process phospholipases Circadian rhythm - plant Cysteine and methionine metabolism Glycerophospholipid metabolism Terpenoid backbone biosynthesis response to water deprivation Ubiquitin mediated proteolysis identical protein binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |