TreatCFM000294's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phytol salvage pathway | 0.000354636 | plantCyc |
| phytol kinase activity | 0.001950499 | GO:0010276 |
| vitamin E biosynthetic process | 0.011694348 | GO:0010189 |
| chloroplast | 0.012314842 | GO:0009507 |
| DNA-directed RNA polymerase activity | 0.022357933 | GO:0003899 |
| Purine metabolism | 0.026655368 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004297 | AT5G04490 (2.00E-70) | VTE5|vitamin E pathway gene 5 |
| CRO_T004983 | - | - |
| CRO_T008606 | ATCG00180 (1.00E-60) | RPOC1|DNA-directed RNA polymerase family protein |
| CRO_T011947 | - | - |
| CRO_T014499 | - | - |
| CRO_T024677 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000009 | phytol salvage pathway | details |
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000117 | details | |
| TreatCFM000216 | phytol salvage pathway phytol kinase activity plasma membrane respiratory chain complex I vitamin E biosynthetic process ATP synthesis coupled electron transport NADH dehydrogenase (ubiquinone) activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: NAC | details |
| TreatCFM000241 | phytol salvage pathway phytol kinase activity | details |
| TreatCFM000420 | phytol kinase activity phytol salvage pathway vitamin E biosynthetic process ATP biosynthetic process proton transport Photosynthesis chloroplast part thylakoid | details |
| TreatCFM000798 | phytol salvage pathway Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase phytol kinase activity vitamin E biosynthetic process non-membrane spanning protein tyrosine kinase activity | details |
| TreatCFM000880 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity phytol kinase activity phytol salvage pathway protein methyltransferase activity vitamin E biosynthetic process protein methylation regulation of signal transduction gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt | details |
Expression profiles
 Show details about module gene expression profiling |